| _already_set_up (defined in stir::Reconstruction< TargetT >) | stir::Reconstruction< TargetT > | protected |
| _disable_output | stir::Reconstruction< TargetT > | protected |
| _verbosity | stir::Reconstruction< TargetT > | protected |
| anatomical_image_filenames | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| anatomical_prior_sptrs (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| apply_multiplicative_update(TargetT ¤t_image_estimate, const TargetT &multiplicative_update_image) (defined in stir::OSMAPOSLReconstruction< TargetT >) | stir::OSMAPOSLReconstruction< TargetT > | protectedvirtual |
| ask_parameters() override | stir::KOSMAPOSLReconstruction< TargetT > | virtual |
| ask_type_and_parameters() | stir::RegisteredObject< Reconstruction< TargetT > > | inlinestatic |
| check(TargetT const &target_data) const | stir::Reconstruction< TargetT > | protectedvirtual |
| compute_kernelised_image(TargetT &kernelised_image_out, const TargetT &image_to_kernelise, const TargetT ¤t_alpha_estimate) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| compute_sub_gradient_without_penalty_plus_sensitivity(TargetT &gradient, const TargetT ¤t_estimate, const int subset_num) (defined in stir::OSMAPOSLReconstruction< TargetT >) | stir::OSMAPOSLReconstruction< TargetT > | protectedvirtual |
| current_kimage_filename (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| dimx (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| dimy (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| dimz (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| do_rim_truncation | stir::OSMAPOSLReconstruction< TargetT > | protected |
| do_sensitivity (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | friend |
| end_of_iteration_processing(TargetT ¤t_estimate) | stir::IterativeReconstruction< TargetT > | protectedvirtual |
| enforce_initial_positivity | stir::OSMAPOSLReconstruction< TargetT > | protected |
| freeze_iterative_kernel_at_subiter_num (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| get_anatomical_image_filenames() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_anatomical_prior_sptrs() (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_CPU_timer_value() const | stir::TimedObject | inline |
| get_freeze_iterative_kernel_at_subiter_num() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_hybrid() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_initial_data_ptr() const | stir::IterativeReconstruction< TargetT > | virtual |
| get_input_data() const override | stir::IterativeReconstruction< TargetT > | virtual |
| get_inter_iteration_filter() const | stir::IterativeReconstruction< TargetT > | |
| get_inter_iteration_filter_interval() const | stir::IterativeReconstruction< TargetT > | |
| get_inter_iteration_filter_sptr() (defined in stir::IterativeReconstruction< TargetT >) | stir::IterativeReconstruction< TargetT > | |
| get_max_num_full_iterations() const | stir::IterativeReconstruction< TargetT > | |
| get_num_neighbours() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_num_non_zero_feat() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_num_subiterations() const | stir::IterativeReconstruction< TargetT > | |
| get_num_subsets() const | stir::IterativeReconstruction< TargetT > | |
| get_objective_function() const | stir::OSMAPOSLReconstruction< TargetT > | |
| get_objective_function_sptr() const (defined in stir::IterativeReconstruction< TargetT >) | stir::IterativeReconstruction< TargetT > | |
| get_only_2D() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_parameters() | stir::KOSMAPOSLReconstruction< TargetT > | inline |
| get_parameters() const | stir::KOSMAPOSLReconstruction< TargetT > | inline |
| get_randomise_subset_order() const | stir::IterativeReconstruction< TargetT > | |
| get_registered_name() const override | stir::RegisteredParsingObject< KOSMAPOSLReconstruction< TargetT >, Reconstruction< TargetT >, OSMAPOSLReconstruction< TargetT > > | inlinevirtual |
| get_report_objective_function_values_interval() const | stir::IterativeReconstruction< TargetT > | |
| get_save_interval() const | stir::IterativeReconstruction< TargetT > | |
| get_sigma_dm() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_sigma_dp() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_sigma_m() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_sigma_p() const (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| get_start_subiteration_num() const | stir::IterativeReconstruction< TargetT > | |
| get_start_subset_num() const | stir::IterativeReconstruction< TargetT > | |
| get_subiteration_num() const | stir::IterativeReconstruction< TargetT > | inline |
| get_subset_num() | stir::IterativeReconstruction< TargetT > | |
| get_subset_sensitivity(const int subset_num) (defined in stir::OSMAPOSLReconstruction< TargetT >) | stir::OSMAPOSLReconstruction< TargetT > | protectedvirtual |
| get_target_image() | stir::Reconstruction< TargetT > | |
| get_wall_clock_timer_value() const | stir::TimedObject | inline |
| hybrid (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| initial_data_filename | stir::IterativeReconstruction< TargetT > | protected |
| initialise(const std::string ¶meter_filename) | stir::Reconstruction< TargetT > | protected |
| initialise_keymap() override | stir::KOSMAPOSLReconstruction< TargetT > | protectedvirtual |
| input_filename | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| inter_iteration_filter_interval | stir::IterativeReconstruction< TargetT > | protected |
| inter_iteration_filter_ptr | stir::IterativeReconstruction< TargetT > | protected |
| inter_update_filter_interval | stir::OSMAPOSLReconstruction< TargetT > | protected |
| inter_update_filter_ptr | stir::OSMAPOSLReconstruction< TargetT > | protected |
| iterative_kernel_image_frozen_sptr (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| IterativeReconstruction() (defined in stir::IterativeReconstruction< TargetT >) | stir::IterativeReconstruction< TargetT > | protected |
| kernelised_output_filename_prefix (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| kmnorm_sptrs (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| KOSMAPOSLReconstruction() | stir::KOSMAPOSLReconstruction< TargetT > | |
| KOSMAPOSLReconstruction(const std::string ¶meter_filename) | stir::KOSMAPOSLReconstruction< TargetT > | explicit |
| kpnorm_sptr (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| list_registered_names(std::ostream &stream) | stir::RegisteredObject< Reconstruction< TargetT > > | inlinestatic |
| make_filename_prefix_subiteration_num(const std::string &filename_prefix) const | stir::IterativeReconstruction< TargetT > | |
| make_filename_prefix_subiteration_num() const | stir::IterativeReconstruction< TargetT > | |
| MAP_model | stir::OSMAPOSLReconstruction< TargetT > | protected |
| max_ind (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| max_num_full_iterations | stir::IterativeReconstruction< TargetT > | protected |
| maximum_relative_change | stir::OSMAPOSLReconstruction< TargetT > | protected |
| method_info() const override | stir::OSMAPOSLReconstruction< TargetT > | virtual |
| min_ind (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| minimum_relative_change | stir::OSMAPOSLReconstruction< TargetT > | protected |
| num_elem_neighbourhood (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| num_neighbours (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| num_non_zero_feat (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| num_subiterations | stir::IterativeReconstruction< TargetT > | protected |
| num_subsets | stir::IterativeReconstruction< TargetT > | protected |
| num_voxels (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| objective_function_sptr (defined in stir::IterativeReconstruction< TargetT >) | stir::IterativeReconstruction< TargetT > | protected |
| only_2D (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| operator=(const ParsingObject &) (defined in stir::ParsingObject) | stir::ParsingObject | |
| OSMAPOSLReconstruction() | stir::OSMAPOSLReconstruction< TargetT > | |
| OSMAPOSLReconstruction(const std::string ¶meter_filename) | stir::OSMAPOSLReconstruction< TargetT > | explicit |
| output_file_format_ptr | stir::Reconstruction< TargetT > | protected |
| output_filename_prefix | stir::Reconstruction< TargetT > | protected |
| parameter_info() override | stir::RegisteredParsingObject< KOSMAPOSLReconstruction< TargetT >, Reconstruction< TargetT >, OSMAPOSLReconstruction< TargetT > > | inlinevirtual |
| parse(std::istream &f) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parse(const char *const filename) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parser (defined in stir::ParsingObject) | stir::ParsingObject | protected |
| ParsingObject() (defined in stir::ParsingObject) | stir::ParsingObject | |
| ParsingObject(const ParsingObject &) (defined in stir::ParsingObject) | stir::ParsingObject | |
| post_filter_sptr | stir::Reconstruction< TargetT > | protected |
| post_processing() override | stir::KOSMAPOSLReconstruction< TargetT > | protectedvirtual |
| randomise_subset_order | stir::IterativeReconstruction< TargetT > | protected |
| read_from_stream(std::istream *) | stir::RegisteredParsingObject< KOSMAPOSLReconstruction< TargetT >, Reconstruction< TargetT >, OSMAPOSLReconstruction< TargetT > > | inlinestatic |
| read_registered_object(std::istream *in, const std::string ®istered_name) | stir::RegisteredObject< Reconstruction< TargetT > > | inlinestatic |
| reconstruct() override | stir::IterativeReconstruction< TargetT > | virtual |
| reconstruct(shared_ptr< TargetT > const &target_data_sptr) override | stir::IterativeReconstruction< TargetT > | virtual |
| Reconstruction() | stir::Reconstruction< TargetT > | |
| registered_name | stir::KOSMAPOSLReconstruction< TargetT > | static |
| RegisteredObject() (defined in stir::RegisteredObject< Reconstruction< TargetT > >) | stir::RegisteredObject< Reconstruction< TargetT > > | inline |
| registry() | stir::RegisteredObject< Reconstruction< TargetT > > | inlineprotectedstatic |
| RegistryType typedef | stir::RegisteredObject< Reconstruction< TargetT > > | protected |
| report_objective_function_values_interval | stir::IterativeReconstruction< TargetT > | protected |
| reset_timers() | stir::TimedObject | inline |
| RootFactory typedef | stir::RegisteredObject< Reconstruction< TargetT > > | protected |
| save_interval | stir::IterativeReconstruction< TargetT > | protected |
| sens_filenames (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| set_anatomical_image_filename(const std::string &, const int index) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_anatomical_image_filename(const std::string &) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_anatomical_prior_sptr(shared_ptr< TargetT >, int index) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_anatomical_prior_sptr(shared_ptr< TargetT > arg) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_defaults() override | stir::KOSMAPOSLReconstruction< TargetT > | protectedvirtual |
| set_disable_output(bool _val) | stir::Reconstruction< TargetT > | |
| set_enforce_initial_positivity(const bool) (defined in stir::OSMAPOSLReconstruction< TargetT >) | stir::OSMAPOSLReconstruction< TargetT > | |
| set_freeze_iterative_kernel_at_subiter_num(const int) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_hybrid(const bool) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_input_data(const shared_ptr< ExamData > &arg) override | stir::IterativeReconstruction< TargetT > | virtual |
| set_inter_iteration_filter_interval(const int) | stir::IterativeReconstruction< TargetT > | |
| set_inter_iteration_filter_ptr(const shared_ptr< DataProcessor< TargetT >> &) | stir::IterativeReconstruction< TargetT > | |
| set_inter_update_filter_interval(const int) | stir::OSMAPOSLReconstruction< TargetT > | |
| set_inter_update_filter_ptr(const shared_ptr< DataProcessor< TargetT >> &) | stir::OSMAPOSLReconstruction< TargetT > | |
| set_key_values() | stir::ParsingObject | protectedvirtual |
| set_MAP_model(const std::string &) | stir::OSMAPOSLReconstruction< TargetT > | |
| set_max_num_full_iterations(const int) | stir::IterativeReconstruction< TargetT > | |
| set_maximum_relative_change(const double) | stir::OSMAPOSLReconstruction< TargetT > | |
| set_minimum_relative_change(const double) | stir::OSMAPOSLReconstruction< TargetT > | |
| set_num_neighbours(const int) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_num_non_zero_feat(const int) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_num_subiterations(const int) | stir::IterativeReconstruction< TargetT > | |
| set_num_subsets(const int) | stir::IterativeReconstruction< TargetT > | |
| set_objective_function_sptr(const shared_ptr< GeneralisedObjectiveFunction< TargetT >> &) | stir::IterativeReconstruction< TargetT > | |
| set_only_2D(const bool) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_output_file_format_ptr(const shared_ptr< OutputFileFormat< TargetT >> &) | stir::Reconstruction< TargetT > | |
| set_output_filename_prefix(const std::string &) | stir::Reconstruction< TargetT > | |
| set_post_processor_sptr(const shared_ptr< DataProcessor< TargetT >> &) | stir::Reconstruction< TargetT > | |
| set_randomise_subset_order(const bool) | stir::IterativeReconstruction< TargetT > | |
| set_report_objective_function_values_interval(const int) | stir::IterativeReconstruction< TargetT > | |
| set_save_interval(const int) | stir::IterativeReconstruction< TargetT > | |
| set_sigma_dm(const double) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_sigma_dp(const double) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_sigma_m(const double, const int index) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_sigma_m(const double) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_sigma_p(const double) (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | |
| set_start_subiteration_num(const int) | stir::IterativeReconstruction< TargetT > | |
| set_start_subset_num(const int) | stir::IterativeReconstruction< TargetT > | |
| set_write_update_image(const int) | stir::OSMAPOSLReconstruction< TargetT > | |
| sigma_dm (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| sigma_dp (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| sigma_m (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| sigma_p (defined in stir::KOSMAPOSLReconstruction< TargetT >) | stir::KOSMAPOSLReconstruction< TargetT > | protected |
| start_subiteration_num | stir::IterativeReconstruction< TargetT > | protected |
| start_subset_num | stir::IterativeReconstruction< TargetT > | protected |
| start_timers(bool do_reset=false) const | stir::TimedObject | inline |
| stop_timers() const | stir::TimedObject | inline |
| subiteration_num | stir::IterativeReconstruction< TargetT > | protected |
| target_data_sptr | stir::Reconstruction< TargetT > | protected |
| terminate_iterations | stir::IterativeReconstruction< TargetT > | protected |
| write_update_image | stir::OSMAPOSLReconstruction< TargetT > | protected |
| ~ParsingObject() (defined in stir::ParsingObject) | stir::ParsingObject | inlinevirtual |
| ~Reconstruction() override | stir::Reconstruction< TargetT > | inline |
| ~RegisteredObjectBase() override (defined in stir::RegisteredObjectBase) | stir::RegisteredObjectBase | inline |
