| _already_set_up (defined in stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > >) | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | protected |
| accumulate_Hessian_times_input(DiscretisedDensity< 3, elemT > &output, const DiscretisedDensity< 3, elemT > ¤t_estimate, const DiscretisedDensity< 3, elemT > &input) const | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | virtual |
| add_multiplication_with_approximate_Hessian(DiscretisedDensity< 3, elemT > &output, const DiscretisedDensity< 3, elemT > &input) const | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | virtual |
| alpha (defined in stir::PLSPrior< elemT >) | stir::PLSPrior< elemT > | protected |
| anatomical_filename (defined in stir::PLSPrior< elemT >) | stir::PLSPrior< elemT > | protected |
| ask_parameters() (defined in stir::ParsingObject) | stir::ParsingObject | |
| ask_type_and_parameters() | stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inlinestatic |
| check(DiscretisedDensity< 3, elemT > const ¤t_image_estimate) const override | stir::PLSPrior< elemT > | protected |
| RegisteredParsingObject< PLSPrior< elemT >, GeneralisedPrior< DiscretisedDensity< 3, elemT > >, GeneralisedPrior< DiscretisedDensity< 3, elemT > > >::check(DiscretisedDensity< 3, elemT > const ¤t_estimate) const | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | protectedvirtual |
| compute_gradient(DiscretisedDensity< 3, elemT > &prior_gradient, const DiscretisedDensity< 3, elemT > ¤t_image_estimate) override | stir::PLSPrior< elemT > | virtual |
| compute_gradient_times_input(const DiscretisedDensity< 3, elemT > &input, const DiscretisedDensity< 3, elemT > ¤t_estimate) | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | virtual |
| compute_Hessian(DiscretisedDensity< 3, elemT > &prior_Hessian_for_single_densel, const BasicCoordinate< 3, int > &coords, const DiscretisedDensity< 3, elemT > ¤t_image_estimate) const | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | virtual |
| compute_Hessian_diagonal(DiscretisedDensity< 3, elemT > &Hessian_diagonal, const DiscretisedDensity< 3, elemT > ¤t_estimate) const | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | virtual |
| compute_value(const DiscretisedDensity< 3, elemT > ¤t_image_estimate) override | stir::PLSPrior< elemT > | virtual |
| eta (defined in stir::PLSPrior< elemT >) | stir::PLSPrior< elemT > | protected |
| GeneralisedPrior() (defined in stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > >) | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | inline |
| get_alpha() const (defined in stir::PLSPrior< elemT >) | stir::PLSPrior< elemT > | |
| get_anatomical_grad_sptr(int direction) const (defined in stir::PLSPrior< elemT >) | stir::PLSPrior< elemT > | |
| get_anatomical_image_sptr() const | stir::PLSPrior< elemT > | |
| get_eta() const | stir::PLSPrior< elemT > | |
| get_kappa_sptr() const | stir::PLSPrior< elemT > | |
| get_norm_sptr() const (defined in stir::PLSPrior< elemT >) | stir::PLSPrior< elemT > | |
| get_only_2D() | stir::PLSPrior< elemT > | inline |
| get_penalisation_factor() const (defined in stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > >) | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | inline |
| get_registered_name() const override | stir::RegisteredParsingObject< PLSPrior< elemT >, GeneralisedPrior< DiscretisedDensity< 3, elemT > >, GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inlinevirtual |
| gradient_filename_prefix | stir::PLSPrior< elemT > | protected |
| initialise_keymap() override | stir::PLSPrior< elemT > | protectedvirtual |
| is_convex() const override | stir::PLSPrior< elemT > | virtual |
| kappa_filename | stir::PLSPrior< elemT > | protected |
| list_registered_names(std::ostream &stream) | stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inlinestatic |
| only_2D | stir::PLSPrior< elemT > | protected |
| operator=(const ParsingObject &) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parameter_info() override | stir::RegisteredParsingObject< PLSPrior< elemT >, GeneralisedPrior< DiscretisedDensity< 3, elemT > >, GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inlinevirtual |
| parse(std::istream &f) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parse(const char *const filename) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parser (defined in stir::ParsingObject) | stir::ParsingObject | protected |
| ParsingObject() (defined in stir::ParsingObject) | stir::ParsingObject | |
| ParsingObject(const ParsingObject &) (defined in stir::ParsingObject) | stir::ParsingObject | |
| penalisation_factor (defined in stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > >) | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | protected |
| PLSPrior() | stir::PLSPrior< elemT > | |
| PLSPrior(const bool only_2D, float penalization_factor) | stir::PLSPrior< elemT > | |
| post_processing() override | stir::PLSPrior< elemT > | protectedvirtual |
| read_from_stream(std::istream *) | stir::RegisteredParsingObject< PLSPrior< elemT >, GeneralisedPrior< DiscretisedDensity< 3, elemT > >, GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inlinestatic |
| read_registered_object(std::istream *in, const std::string ®istered_name) | stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inlinestatic |
| registered_name | stir::PLSPrior< elemT > | static |
| registered_name (defined in stir::PLSPrior< elemT >) | stir::PLSPrior< elemT > | |
| RegisteredObject() (defined in stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > >) | stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inline |
| registry() | stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | inlineprotectedstatic |
| RegistryType typedef | stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | protected |
| RootFactory typedef | stir::RegisteredObject< GeneralisedPrior< DiscretisedDensity< 3, elemT > > > | protected |
| set_alpha(const double) | stir::PLSPrior< elemT > | |
| set_anatomical_filename(const std::string &filename) | stir::PLSPrior< elemT > | |
| set_anatomical_image_sptr(const shared_ptr< const DiscretisedDensity< 3, elemT >> &) | stir::PLSPrior< elemT > | |
| set_defaults() override | stir::PLSPrior< elemT > | protectedvirtual |
| set_eta(const double) | stir::PLSPrior< elemT > | |
| set_kappa_filename(const std::string &filename) | stir::PLSPrior< elemT > | |
| set_kappa_sptr(const shared_ptr< const DiscretisedDensity< 3, elemT >> &) | stir::PLSPrior< elemT > | |
| set_key_values() | stir::ParsingObject | protectedvirtual |
| set_only_2D(const bool arg) | stir::PLSPrior< elemT > | inline |
| set_penalisation_factor(float new_penalisation_factor) | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | inline |
| set_up(shared_ptr< const DiscretisedDensity< 3, elemT >> const &target_sptr) override | stir::PLSPrior< elemT > | |
| RegisteredParsingObject< PLSPrior< elemT >, GeneralisedPrior< DiscretisedDensity< 3, elemT > >, GeneralisedPrior< DiscretisedDensity< 3, elemT > > >::set_up(shared_ptr< const DiscretisedDensity< 3, elemT > > const &target_sptr) | stir::GeneralisedPrior< DiscretisedDensity< 3, elemT > > | virtual |
| ~ParsingObject() (defined in stir::ParsingObject) | stir::ParsingObject | inlinevirtual |
| ~RegisteredObjectBase() override (defined in stir::RegisteredObjectBase) | stir::RegisteredObjectBase | inline |
