| accumulate_Hessian_times_input(TargetT &output, const TargetT ¤t_image_estimate, const TargetT &input) const | stir::GeneralisedObjectiveFunction< TargetT > | |
| accumulate_Hessian_times_input_without_penalty(TargetT &output, const TargetT ¤t_image_estimate, const TargetT &input) const (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| accumulate_sub_Hessian_times_input(TargetT &output, const TargetT ¤t_image_estimate, const TargetT &input, const int subset_num) const (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| accumulate_sub_Hessian_times_input_without_penalty(TargetT &output, const TargetT ¤t_image_estimate, const TargetT &input, const int subset_num) const (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| actual_accumulate_sub_Hessian_times_input_without_penalty(TargetT &output, const TargetT ¤t_image_estimate, const TargetT &input, const int subset_num) const override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | virtual |
| actual_add_multiplication_with_approximate_sub_Hessian_without_penalty(TargetT &output, const TargetT &input, const int subset_num) const | stir::GeneralisedObjectiveFunction< TargetT > | protectedvirtual |
| actual_compute_objective_function_without_penalty(const TargetT ¤t_estimate, const int subset_num) override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | virtual |
| actual_compute_subset_gradient_without_penalty(TargetT &gradient, const TargetT ¤t_estimate, const int subset_num, const bool add_sensitivity) override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | virtual |
| actual_subsets_are_approximately_balanced(std::string &warning_message) const override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protectedvirtual |
| add_multiplication_with_approximate_Hessian(TargetT &output, const TargetT &input) const (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| add_multiplication_with_approximate_Hessian_without_penalty(TargetT &output, const TargetT &input) const (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| add_multiplication_with_approximate_sub_Hessian(TargetT &output, const TargetT &input, const int subset_num) const (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| add_multiplication_with_approximate_sub_Hessian_without_penalty(TargetT &output, const TargetT &input, const int subset_num) const | stir::GeneralisedObjectiveFunction< TargetT > | |
| add_subset_sensitivity(TargetT &sensitivity, const int subset_num) const override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protectedvirtual |
| additive_proj_data_sptr (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| additive_projection_data_filename | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| already_set_up (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | protected |
| ask_parameters() (defined in stir::ParsingObject) | stir::ParsingObject | |
| ask_type_and_parameters() | stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > > | inlinestatic |
| cache_lm_file | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| cache_path | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| cache_size | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| compute_gradient(TargetT &gradient, const TargetT ¤t_estimate) | stir::GeneralisedObjectiveFunction< TargetT > | virtual |
| compute_gradient_without_penalty(TargetT &gradient, const TargetT ¤t_estimate) | stir::GeneralisedObjectiveFunction< TargetT > | virtual |
| compute_objective_function(const TargetT ¤t_estimate, const int subset_num) | stir::GeneralisedObjectiveFunction< TargetT > | |
| compute_objective_function(const TargetT ¤t_estimate) | stir::GeneralisedObjectiveFunction< TargetT > | |
| compute_objective_function_without_penalty(const TargetT ¤t_estimate, const int subset_num) | stir::GeneralisedObjectiveFunction< TargetT > | virtual |
| compute_objective_function_without_penalty(const TargetT ¤t_estimate) | stir::GeneralisedObjectiveFunction< TargetT > | virtual |
| compute_penalty(const TargetT ¤t_estimate, const int subset_num) | stir::GeneralisedObjectiveFunction< TargetT > | |
| compute_penalty(const TargetT ¤t_estimate) | stir::GeneralisedObjectiveFunction< TargetT > | |
| compute_sensitivities() | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | protected |
| compute_sub_gradient(TargetT &gradient, const TargetT ¤t_estimate, const int subset_num) | stir::GeneralisedObjectiveFunction< TargetT > | virtual |
| compute_sub_gradient_without_penalty(TargetT &gradient, const TargetT ¤t_estimate, const int subset_num) override | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | virtual |
| compute_sub_gradient_without_penalty_plus_sensitivity(TargetT &gradient, const TargetT ¤t_estimate, const int subset_num) | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | virtual |
| compute_value(const TargetT ¤t_estimate) | stir::GeneralisedObjectiveFunction< TargetT > | inline |
| construct_target_ptr() const override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | virtual |
| current_frame_num (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| do_time_frame | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| fill_nonidentifiable_target_parameters(TargetT &target, const float value) const override | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | virtual |
| frame_defs | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | |
| frame_defs_filename (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| GeneralisedObjectiveFunction() (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | inline |
| get_cache_filename(unsigned int icache) const | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| get_cache_max_size() const | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| get_cache_path() const | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| get_exam_info_uptr_for_target() const override (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | virtual |
| get_input_data() const override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| get_max_segment_num_to_process() const | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | |
| get_normalisation_sptr() const (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | inline |
| get_num_subsets() const | stir::GeneralisedObjectiveFunction< TargetT > | |
| get_objective_function_values_report(const TargetT ¤t_estimate) | stir::GeneralisedObjectiveFunction< TargetT > | |
| get_prior_ptr() const | stir::GeneralisedObjectiveFunction< TargetT > | |
| get_prior_sptr() (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| get_recompute_cache() const (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | |
| get_recompute_sensitivity() const | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| get_registered_name() const override | stir::RegisteredParsingObject< PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >, GeneralisedObjectiveFunction< TargetT >, PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > > | inlinevirtual |
| get_sensitivity() const | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| get_sensitivity_filename() const | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| get_subsensitivity_filenames() const | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| get_subset_sensitivity(const int subset_num) const | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| get_use_subset_sensitivities() const | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| has_add | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| initialise_keymap() override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protectedvirtual |
| list_mode_data_sptr | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| list_mode_filename | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| list_registered_names(std::ostream &stream) | stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > > | inlinestatic |
| max_ring_difference_num_to_process | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protected |
| normalisation_sptr (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| num_events_to_use | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| num_subsets (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | protected |
| operator=(const ParsingObject &) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parameter_info() override | stir::RegisteredParsingObject< PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >, GeneralisedObjectiveFunction< TargetT >, PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > > | inlinevirtual |
| parse(std::istream &f) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parse(const char *const filename) (defined in stir::ParsingObject) | stir::ParsingObject | |
| parser (defined in stir::ParsingObject) | stir::ParsingObject | protected |
| ParsingObject() (defined in stir::ParsingObject) | stir::ParsingObject | |
| ParsingObject(const ParsingObject &) (defined in stir::ParsingObject) | stir::ParsingObject | |
| PM_sptr | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protected |
| PoissonLogLikelihoodWithLinearModelForMeanAndListModeData() (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | |
| PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin() (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | |
| post_processing() override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protectedvirtual |
| prior_is_zero() const | stir::GeneralisedObjectiveFunction< TargetT > | |
| prior_sptr (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | protected |
| proj_data_info_sptr | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| projector_pair_sptr | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protected |
| read_from_stream(std::istream *) | stir::RegisteredParsingObject< PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >, GeneralisedObjectiveFunction< TargetT >, PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > > | inlinestatic |
| read_registered_object(std::istream *in, const std::string ®istered_name) | stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > > | inlinestatic |
| recompute_cache | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| reduce_memory_usage | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| registered_name | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | static |
| RegisteredObject() (defined in stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > >) | stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > > | inline |
| registry() | stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > > | inlineprotectedstatic |
| RegistryType typedef | stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > > | protected |
| RootFactory typedef | stir::RegisteredObject< GeneralisedObjectiveFunction< TargetT > > | protected |
| sens_backprojector_sptr | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protected |
| sens_proj_data_info_sptr | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protected |
| set_additive_proj_data_sptr(const shared_ptr< ExamData > &) override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| set_cache_max_size(const unsigned long int arg) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| set_cache_path(const std::string &cache_path) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| set_defaults() override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protectedvirtual |
| set_input_data(const shared_ptr< ExamData > &) override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| set_key_values() | stir::ParsingObject | protectedvirtual |
| set_max_ring_difference(const int arg) (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | |
| set_max_segment_num_to_process(int) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | |
| set_normalisation_sptr(const shared_ptr< BinNormalisation > &) override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | virtual |
| set_num_subsets(const int new_num_subsets) override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | virtual |
| set_prior_sptr(const shared_ptr< GeneralisedPrior< TargetT >> &) | stir::GeneralisedObjectiveFunction< TargetT > | |
| set_proj_matrix(const shared_ptr< ProjMatrixByBin > &) (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | |
| set_recompute_cache(bool) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | |
| set_recompute_sensitivity(const bool) (defined in stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| set_sensitivity_filename(const std::string &) | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| set_skip_balanced_subsets(const bool arg) (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | |
| set_skip_lm_input_file(const bool arg) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | |
| set_subsensitivity_filenames(const std::string &) | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| set_subset_sensitivity_sptr(const shared_ptr< TargetT > &, const int subset_num) (defined in stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| set_up(shared_ptr< TargetT > const &target_sptr) override | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | virtual |
| set_up_before_sensitivity(shared_ptr< const TargetT > const &target_sptr) override | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protectedvirtual |
| set_use_subset_sensitivities(const bool) | stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > | |
| skip_balanced_subsets | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protected |
| skip_lm_input_file | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| start_new_time_frame(const unsigned int new_frame_num) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protectedvirtual |
| subsets_are_approximately_balanced() const | stir::GeneralisedObjectiveFunction< TargetT > | |
| subsets_are_approximately_balanced(std::string &warning_message) const | stir::GeneralisedObjectiveFunction< TargetT > | |
| target_parameter_parser (defined in stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >) | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > | protected |
| use_tofsens | stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > | protected |
| ~GeneralisedObjectiveFunction() override (defined in stir::GeneralisedObjectiveFunction< TargetT >) | stir::GeneralisedObjectiveFunction< TargetT > | |
| ~ParsingObject() (defined in stir::ParsingObject) | stir::ParsingObject | inlinevirtual |
| ~RegisteredObjectBase() override (defined in stir::RegisteredObjectBase) | stir::RegisteredObjectBase | inline |
