STIR
6.2.0
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a class for Interfile keywords (and parsing) specific to projection data (i.e. ProjDataFromStream) More...
#include "stir/IO/InterfileHeader.h"
Public Attributes | |
std::vector< int > | segment_sequence |
std::vector< int > | min_ring_difference |
std::vector< int > | max_ring_difference |
std::vector< int > | num_rings_per_segment |
std::vector< int > | timing_poss_sequence |
std::vector< std::string > | applied_corrections |
int | num_timing_poss |
int | num_segments |
int | num_views |
int | num_bins |
ProjDataFromStream::StorageOrder | storage_order |
shared_ptr< ProjDataInfo > | data_info_sptr |
Public Attributes inherited from stir::InterfileHeader | |
ASCIIlist_type | type_of_data_values |
int | type_of_data_index |
ASCIIlist_type | PET_data_type_values |
int | PET_data_type_index |
ASCIIlist_type | process_status_values |
int | process_status_index |
std::string | data_file_name |
DateTimeStrings | study_date_time |
NumericType | type_of_numbers |
This will be determined from number_format_index and bytes_per_pixel. | |
ByteOrder | file_byte_order |
This will be determined from byte_order_index, or just keep its default value;. | |
int | num_dimensions |
int | num_energy_windows |
std::vector< std::string > | matrix_labels |
std::vector< std::vector< int > > | matrix_size |
std::vector< float > | pixel_sizes |
std::vector< std::vector< double > > | image_scaling_factors |
std::vector< unsigned long > | data_offset_each_dataset |
std::vector< float > | lower_en_window_thresholds |
lower_en_window_thresholds More... | |
std::vector< float > | upper_en_window_thresholds |
upper_en_window_thresholds More... | |
Public Attributes inherited from stir::MinimalInterfileHeader | |
std::string | version_of_keys |
std::string | siemens_mi_version |
Protected Member Functions | |
bool | post_processing () override |
Returns false if OK, true if not. | |
Protected Member Functions inherited from stir::InterfileHeader | |
void | set_version_specific_keys () override |
Overload with specifics for STIR3.0 for backwards compatibility. | |
virtual void | read_matrix_info () |
virtual void | read_num_energy_windows () |
void | read_frames_info () |
virtual int | get_num_datasets () const |
Get the number of datasets. More... | |
Protected Member Functions inherited from stir::KeyParser | |
virtual std::string | standardise_keyword (const std::string &keyword) const |
convert 'rough' keyword into a standardised form More... | |
virtual std::string | get_keyword (const std::string &) const |
gets a keyword from a string More... | |
void | add_key (const std::string &keyword, KeyArgument::type t, KeywordProcessor function, void *variable=0, const ASCIIlist_type *const list=0) |
add a keyword to the list, together with its call_back function More... | |
void | add_key (const std::string &keyword, KeyArgument::type t, KeywordProcessor function, void *variable, const int vectorised_key_level, const ASCIIlist_type *const list=0) |
add a keyword to the list, together with its call_back function More... | |
void | add_key (const std::string &keyword, KeyArgument::type t, void *variable, const ASCIIlist_type *const list=0) |
version that defaults 'function' to set_variable More... | |
void | add_key (const std::string &keyword, KeyArgument::type t, void *variable, const int vectorised_key_level, const ASCIIlist_type *const list=0) |
version that defaults 'function' to set_variable More... | |
Additional Inherited Members | |
Public Member Functions inherited from stir::MinimalInterfileHeader | |
shared_ptr< const ExamInfo > | get_exam_info_sptr () const |
Get a shared pointer to the exam information. | |
const ExamInfo & | get_exam_info () const |
Get the exam information. | |
Public Member Functions inherited from stir::KeyParser | |
bool | parse (std::istream &f, const bool write_warnings=true) |
parse() returns false if there is some error, true otherwise More... | |
bool | parse (const char *const filename, const bool write_warnings=true) |
parse() returns false if there is some error, true otherwise More... | |
bool | parse (const std::string &, const bool write_warnings=true) |
void | add_key (const std::string &keyword, float *variable_ptr) |
add a keyword. When parsing, parse its value as a float and put it in *variable_ptr | |
void | add_vectorised_key (const std::string &keyword, std::vector< float > *variable_ptr) |
add a vectorised keyword. When parsing, parse its value as a float and put it in (*variable_ptr)[current_index] | |
void | add_key (const std::string &keyword, double *variable_ptr) |
add a keyword. When parsing, parse its value as a double and put it in *variable_ptr | |
void | add_vectorised_key (const std::string &keyword, std::vector< double > *variable_ptr) |
add a vectorised keyword. When parsing, parse its value as a double and put it in (*variable_ptr)[current_index] | |
void | add_vectorised_key (const std::string &keyword, std::vector< std::vector< double >> *variable_ptr) |
add a vectorised keyword. When parsing, parse its value as a list of doubles and put it in (*variable_ptr)[current_index] | |
void | add_key (const std::string &keyword, int *variable_ptr) |
add a keyword. When parsing, parse its value as a int and put it in *variable_ptr | |
void | add_key (const std::string &keyword, std::vector< int > *variable_ptr) |
add a keyword. When parsing, parse its value as a int and put it in *variable_ptr | |
void | add_vectorised_key (const std::string &keyword, std::vector< int > *variable_ptr) |
add a vectorised keyword. When parsing, parse its value as a int and put it in (*variable_ptr)[current_index] | |
void | add_vectorised_key (const std::string &keyword, std::vector< std::vector< int >> *variable_ptr) |
add a vectorised keyword. When parsing, parse its value as a list of ints and put it in (*variable_ptr)[current_index] | |
void | add_key (const std::string &keyword, long int *variable_ptr) |
add a keyword. When parsing, parse its value as a int and put it in *variable_ptr | |
void | add_key (const std::string &keyword, unsigned int *variable_ptr) |
add a keyword. When parsing, parse its value as a int and put it in *variable_ptr | |
void | add_vectorised_key (const std::string &keyword, std::vector< unsigned int > *variable) |
add a vectorised keyword. When parsing, parse its value as an unsigned int and put it in (*variable_ptr)[current_index] | |
void | add_key (const std::string &keyword, unsigned long *variable_ptr) |
add a keyword. When parsing, parse its value as an unsigned long and put it in *variable_ptr | |
void | add_vectorised_key (const std::string &keyword, std::vector< unsigned long > *variable_ptr) |
add a vectorised keyword. When parsing, parse its value as an unsigned long and put it in (*variable_ptr)[current_index] | |
void | add_key (const std::string &keyword, bool *variable_ptr) |
add a keyword. When parsing, parse its value as a int and put the bool value in *variable_ptr More... | |
void | add_key (const std::string &keyword, std::vector< double > *variable_ptr) |
add a keyword. When parsing, parse its value as a list of doubles and put its value in *variable_ptr | |
void | add_key (const std::string &keyword, std::vector< std::string > *variable_ptr) |
add a keyword. When parsing, parse its value as a list of comma-separated strings and put its value in *variable_ptr | |
void | add_key (const std::string &keyword, Array< 2, float > *variable_ptr) |
add a keyword. When parsing, parse its value as a 2d array of floats and put its value in *variable_ptr | |
void | add_key (const std::string &keyword, Array< 3, float > *variable_ptr) |
add a keyword. When parsing, parse its value as a 3d array of floats and put its value in *variable_ptr | |
void | add_key (const std::string &keyword, BasicCoordinate< 3, float > *variable_ptr) |
add a keyword. When parsing, parse its value as a 3d BasicCoordinate of floats and put its value in *variable_ptr | |
void | add_key (const std::string &keyword, BasicCoordinate< 3, Array< 3, float >> *variable_ptr) |
add a keyword. When parsing, parse its value as a 3d BasicCoordinate of a 3d array of floats and put its value in *variable_ptr | |
void | add_key (const std::string &keyword, std::string *variable_ptr) |
void | add_vectorised_key (const std::string &keyword, std::vector< std::string > *variable_ptr) |
add a vectorised keyword. When parsing, parse its value as a string and put it in (*variable_ptr)[current_index] More... | |
void | add_key (const std::string &keyword, int *variable_ptr, const ASCIIlist_type *const list_of_values) |
add a keyword. When parsing, its string value is checked against a list of strings. The corresponding index is stored in variable_ptr. More... | |
void | ignore_key (const std::string &keyword) |
Add keyword this is just ignored by the parser. | |
void | add_start_key (const std::string &keyword) |
add keyword that has to occur before all others More... | |
void | add_stop_key (const std::string &keyword) |
add a keyword that when encountered, will stop the parsing | |
template<typename ParsingClass > | |
void | add_parsing_key (const std::string &keyword, ParsingClass **parsed_object_ptr_ptr) |
add keyword corresponding to an object that will parse the next keys itself More... | |
template<typename ParsingClass > | |
void | add_parsing_key (const std::string &keyword, shared_ptr< ParsingClass > *parsed_object_ptr_ptr) |
add keyword corresponding to an object that will parse the next keys itself More... | |
bool | remove_key (const std::string &keyword) |
Removes a key from the kep map. More... | |
void | add_alias_key (const std::string &keyword, const std::string &alias, bool deprecated_key=true) |
Add an alias for keyword. More... | |
void | print_keywords_to_stream (std::ostream &) const |
Prints all keywords (in random order) to the stream. | |
virtual std::string | parameter_info () const |
Returns a string with keywords and their values. More... | |
virtual void | ask_parameters () |
Ask interactively for values for all keywords. More... | |
int | find_in_ASCIIlist (const std::string &, const ASCIIlist_type &list_of_values) |
returns the index of a string in 'list_of_values', -1 if not found More... | |
void | start_parsing () |
callback function to start parsing, has to be set by first keyword | |
void | stop_parsing () |
to stop parsing | |
void | do_nothing () |
callback function for keys which do not do anything | |
void | set_variable () |
callback function that sets the variable to the value given as the value of the keyword More... | |
void | set_parsing_object () |
callback function that sets the variable by calling the parser (as stored by add_parsing_key()), with argument the value of the keyword More... | |
void | set_shared_parsing_object () |
callback function that sets the shared_ptr variable by calling the parser (as stored by add_parsing_key()), with argument the value of the keyword More... | |
Static Public Attributes inherited from stir::MinimalInterfileHeader | |
static const double | double_value_not_set = -12345.60789 |
A value that can be used to signify that a variable has not been set during parsing. | |
Protected Types inherited from stir::KeyParser | |
typedef void(KeyParser::* | KeywordProcessor) () |
Protected Attributes inherited from stir::InterfileHeader | |
int | num_time_frames |
std::vector< double > | image_relative_start_times |
std::vector< double > | image_durations |
int | bytes_per_pixel |
std::string | isotope_name |
std::vector< std::string > | radionuclide_name |
std::vector< float > | radionuclide_half_life |
std::vector< float > | radionuclide_branching_ratio |
float | calibration_factor |
unsigned long | data_offset |
float | bed_position_horizontal |
float | bed_position_vertical |
Protected Attributes inherited from stir::MinimalInterfileHeader | |
shared_ptr< ExamInfo > | exam_info_sptr |
a class for Interfile keywords (and parsing) specific to projection data (i.e. ProjDataFromStream)