compute_ROI_values.h File Reference

Declaration of various function that computes ROI values. More...

#include "stir/evaluation/ROIValues.h"
#include "stir/VoxelsOnCartesianGrid.h"

Go to the source code of this file.

Classes
class	stir::CartesianCoordinate2D< coordT >
	a templated class for 2-dimensional coordinates. More...
class	stir::CartesianCoordinate3D< coordT >
	a templated class for 3-dimensional coordinates. More...
class	stir::VectorWithOffset< T >
	A templated class for vectors, but with indices starting not from 0. More...
class	stir::DiscretisedDensity< num_dimensions, elemT >
	This abstract class is the basis for all image representations. More...

Namespaces
	stir
	Namespace for the STIR library (and some/most of its applications)

Functions
Functions to compute ROI values
Shapes can be first discretised using Shape3D::construct_volume or a Shape3D parsed. This can make fuzzy boundaries (when the num_samples argument is not (1,1,1), or when DiscretisedShape3D needs zooming). Mean and stddev are computed using weighted versions, taking this smoothness into account, while ROI_min and max are ignore those weights.
void	stir::compute_ROI_values_per_plane (VectorWithOffset< ROIValues > &values, const DiscretisedDensity< 3, float > &density, const Shape3D &shape, const CartesianCoordinate3D< int > &num_samples)
void	stir::compute_ROI_values_per_plane (VectorWithOffset< ROIValues > &values, const DiscretisedDensity< 3, float > &density, const DiscretisedDensity< 3, float > &discretised_shape)
ROIValues	stir::compute_total_ROI_values (const VectorWithOffset< ROIValues > &values)
ROIValues	stir::compute_total_ROI_values (const DiscretisedDensity< 3, float > &image, const Shape3D &shape, const CartesianCoordinate3D< int > &num_samples)
ROIValues	stir::compute_total_ROI_values (const DiscretisedDensity< 3, float > &image, const DiscretisedDensity< 3, float > &discretised_shape)
void	stir::compute_plane_range_ROI_values_per_plane (VectorWithOffset< ROIValues > &values, const DiscretisedDensity< 3, float > &density, const CartesianCoordinate2D< int > &plane_range, const Shape3D &shape, const CartesianCoordinate3D< int > &num_samples)
float	stir::compute_CR_hot (ROIValues &val1, ROIValues &val2)
float	stir::compute_CR_cold (ROIValues &val1, ROIValues &val2)
float	stir::compute_uniformity (ROIValues &val)
VectorWithOffset< float >	stir::compute_CR_hot_per_plane (VectorWithOffset< ROIValues > &val1, VectorWithOffset< ROIValues > &val2)
VectorWithOffset< float >	stir::compute_CR_cold_per_plane (VectorWithOffset< ROIValues > &val1, VectorWithOffset< ROIValues > &val2)
VectorWithOffset< float >	stir::compute_uniformity_per_plane (VectorWithOffset< ROIValues > &val)

Detailed Description

Declaration of various function that computes ROI values.

Author

Kris Thielemans