Directory dependency graph for utilities:
Directories |
Files | |
| file | abs_image.cxx |
| It produces the absolute value image of an image. | |
| file | apply_normfactors.cxx |
| Apply normalisation factors using an ML approach. | |
| file | apply_normfactors3D.cxx |
| Apply normalisation factors estimated using the ML code to projection data. | |
| file | attenuation_coefficients_to_projections.cxx |
| Takes the logarithm of attenuation coefficients to 'convert' them to line integrals. | |
| file | back_project.cxx |
| Back project an image. | |
| file | calculate_attenuation_coefficients.cxx |
Calculates attenuation coefficients (as an alternative to correct_projdata). | |
| file | compare_image.cxx |
| compare images to see if they are identical, allowing for small differences | |
| file | compare_projdata.cxx |
| compare 2 files with sinogram data | |
| file | compute_sqrt_Hessian_row_sum.cxx |
| Computes the Square Root of the Hessian Row Sum of the objective function. | |
| file | construct_randoms_from_GEsingles.cxx |
| Construct randoms as a product of singles estimates. | |
| file | construct_randoms_from_singles.cxx |
| Construct randoms as a product of singles estimates. | |
| file | conv_GATE_raw_ECAT_projdata_to_interfile.cxx |
| This program converts GATE ECAT output (.ima) into STIR interfile format. | |
| file | conv_gipl_to_interfile.cxx |
| This program converts Images from GIPL (Guy's Imaging Processing Lab) format to Interfile Format. | |
| file | conv_interfile_to_gipl.cxx |
| This program converts Images from Interfile Format to GIPL (Guy's Imaging Processing Lab) format. | |
| file | convert_to_binary_image.cxx |
| This program outputs a binary image (voxel values 0 or 1) where all values strictly below a threshold are set to 0, and others to 1. | |
| file | correct_projdata.cxx |
| A utility applying/undoing some corrections on projection data. | |
| file | create_multi_header.cxx |
| create a "Multi" header for a set of data | |
| file | create_projdata_template.cxx |
| A utility that creates a template projection data. | |
| file | ctac_to_mu_values.cxx |
| Produces an image of mu-values from a CT/CTAC. | |
| file | display_projdata.cxx |
| This program displays projection data by segment. | |
| file | do_linear_regression.cxx |
| A simple programme to perform weighted least squares. | |
| file | estimate_triple_energy_window_scatter_sinogram.cxx |
| Calculate Triple energy window scatter. | |
| file | extract_segments.cxx |
| This program extracts projection data by segment into 3d image files. | |
| file | extract_single_images_from_dynamic_image.cxx |
| Split dynamic image into individual images. | |
| file | find_fwhm_in_image.cxx |
| List of FWHM and location of maximum in the image. | |
| file | find_maxima_in_image.cxx |
| List coordinates of maxima in the image to stdout. | |
| file | find_ML_normfactors.cxx |
| Find normalisation factors using an ML approach. | |
| file | find_ML_normfactors3D.cxx |
| Find normalisation factors using an ML approach. | |
| file | find_ML_singles_from_delayed.cxx |
| Find singles (and hence randoms) from delayed events using an ML approach. | |
| file | find_normfactors_from_cylinder_data.cxx |
| Find normalisation factors given projection data of a cylinder (direct method) | |
| file | find_recovery_coefficients_in_image_quality_phantom_nema_nu4.cxx |
| Utility program for calculating recovery coeficient values in the image quality phantom described in NEMA NU 4. | |
| file | find_sum_projection_of_viewgram_and_sinogram.cxx |
| This program reads a projection data file and squeezes a given sinogrm or viewgram of it (from a 2D matrix to a 1D vector). | |
| file | forward_project.cxx |
| Forward project an image. | |
| file | generate_image.cxx |
| A utility to generate images consisting of uniform objects added/subtracted together. | |
| file | get_time_frame_info.cxx |
| Prints start time and duration of a frame to stdout. | |
| file | invert_axis.cxx |
| This program inverts x y or z axis. | |
| file | list_detector_and_bin_info.cxx |
| A utility that lists bin and detector info for a given (cylindrical) scanner on stdout. | |
| file | list_image_info.cxx |
| This program lists basic image info. It works for dynamic images. | |
| file | list_image_values.cxx |
| Utility to extract image values along profiles (or another box-shape) | |
| file | list_projdata_info.cxx |
| A utility that lists size info on the projection data on stdout. | |
| file | list_ROI_values.cxx |
| Utility program for getting ROI values. | |
| file | manip_image.cxx |
| This program performs operations on image data. | |
| file | manip_projdata.cxx |
| process sinogram data | |
| file | poisson_noise.cxx |
| Generates a noise realisation according to Poisson statistics for some projection data. | |
| file | postfilter.cxx |
| This program performs filtering on image data. | |
| file | rebin_projdata.cxx |
| A utility to rebin projection data. | |
| file | separate_true_from_random_scatter_for_necr.cxx |
| This program gets a projection data file of a mouse/rat scatter phantom measured according to NEMA NU 4. It seperates number of true events from number of random+scatter events. | |
| file | shift_image.cxx |
| This program shifts the origin of an image. | |
| file | shift_image_origin.cxx |
| This program shifts the origin of an image. | |
| file | SPECT_dicom_to_interfile.cxx |
| Convert SPECT DICOM projection data to Interfile. | |
| file | SSRB.cxx |
| Main program for stir::SSRB. | |
| file | stir_config.cxx |
| Prints configuration directory and STIR version. | |
| file | stir_list_registries.cxx |
| Prints all registered names for many registries. | |
| file | stir_math.cxx |
| add or multiply data, with some other basic math manipulations | |
| file | stir_timings.cxx |
| Perform timings. | |
| file | stir_write_pgm.cxx |
| This program writes a PGM bitmap for an image (preliminary) | |
| file | warp_and_accumulate_gated_images.cxx |
| This program corrects the motion from an image. | |
| file | warp_image.cxx |
| This program warps an image. | |
| file | write_proj_matrix_by_bin.cxx |
| Program that writes a projection matrix by bin to file. | |
| file | zeropad_planes.cxx |
| This program zero pads the start & end planes of an image. | |
| file | zoom_image.cxx |
| This program serves as a stand-alone zoom/trim utility for image files Run without arguments to get a usage message. | |
