GenerateImage.h

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//
//
/*
    Copyright (C) 2003-2011, Hammersmith Imanet Ltd
    Copyright (C) 2018-2022, University College London
    This file is part of STIR.
 
    SPDX-License-Identifier: Apache-2.0
 
    See STIR/LICENSE.txt for details
*/
 
#include "stir/Shape/Shape3D.h"
#include "stir/PatientPosition.h"
#include "stir/ImagingModality.h"
#include "stir/KeyParser.h"
#include "stir/is_null_ptr.h"
#include "stir/CartesianCoordinate3D.h"
#include "stir/IndexRange3D.h"
#include "stir/Succeeded.h"
#include "stir/IO/OutputFileFormat.h"
#include "stir/VoxelsOnCartesianGrid.h"
#include <iostream>
 
#ifndef __stir_Shape_GenerateImage_h__
#  define __stir_Shape_GenerateImage_h__
 
START_NAMESPACE_STIR
 
class GenerateImage : public KeyParser
{
public:
  explicit GenerateImage(const char* const par_filename);

  Succeeded compute();

  Succeeded save_image();

  shared_ptr<DiscretisedDensity<3, float>> get_output_sptr();
 
private:
  virtual void set_defaults();
  virtual void initialise_keymap();
  bool post_processing() override;
  void set_imaging_modality();
  shared_ptr<ExamInfo> exam_info_sptr;
  std::string imaging_modality_as_string;
  ASCIIlist_type patient_orientation_values;
  ASCIIlist_type patient_rotation_values;
  int patient_orientation_index;
  int patient_rotation_index;
 
  shared_ptr<DiscretisedDensity<3, float>> out_density_ptr;
 
  std::vector<shared_ptr<Shape3D>> shape_ptrs;
  shared_ptr<Shape3D> current_shape_ptr;
  std::vector<float> values;
  float current_value;
  std::string output_filename;
  shared_ptr<OutputFileFormat<DiscretisedDensity<3, float>>> output_file_format_sptr;
 
  void increment_current_shape_num();
 
  int output_image_size_x;
  int output_image_size_y;
  int output_image_size_z;
  float output_voxel_size_x;
  float output_voxel_size_y;
  float output_voxel_size_z;
 
  CartesianCoordinate3D<int> num_samples;
 
  double image_duration;
  double rel_start_time;
};
 
END_NAMESPACE_STIR
 
#endif // __stir_Shape_GenerateImage_h__