Here is a list of all documented functions with links to the class documentation for each member:

- s -

• sample_scatter_points() : stir::ScatterSimulation
• sapyb() : stir::Array< num_dimensions, elemT >, stir::NumericVectorWithOffset< T, elemT >, stir::ProjData, stir::ProjDataInMemory
• save_get_position() : stir::CListModeDataLMF, stir::CListModeDataPENN, stir::CListModeDataROOT, stir::CListModeDataSAFIR< CListRecordT >, stir::ecat::CListModeDataECAT8_32bit, stir::ecat::ecat7::CListModeDataECAT< CListRecordT >, stir::GE::RDF_HDF5::CListModeDataGEHDF5, stir::GE::RDF_HDF5::InputStreamWithRecordsFromHDF5< RecordT >, stir::InputStreamFromROOTFile, stir::InputStreamWithRecords< RecordT, OptionsT >, stir::InputStreamWithRecordsFromUPENNtxt, stir::ListModeData, stir::ListModeData_dummy
• scale() : stir::CombinedShape3D< operation >, stir::DiscretisedShape3D, stir::Shape3D, stir::Shape3DWithOrientation
• scale_around_origin() : stir::Shape3D
• scale_model_matrix() : stir::ModelMatrix< num_param >
• Scanner() : stir::Scanner
• scatter_estimate() : stir::ScatterSimulation, stir::SingleScatterSimulation
• ScatterEstimation() : stir::ScatterEstimation
• ScatterSimulation() : stir::ScatterSimulation
• seed() : stir::GeneralisedPoissonNoiseGenerator
• segment_num() : stir::SegmentIndices
• SegmentBySinogram() : stir::SegmentBySinogram< elemT >
• SegmentByView() : stir::SegmentByView< elemT >
• SegmentIndices() : stir::SegmentIndices
• SeparableArrayFunctionObject() : stir::SeparableArrayFunctionObject< num_dimensions, elemT >
• SeparableCartesianMetzImageFilter() : stir::SeparableCartesianMetzImageFilter< elemT >
• SeparableConvolutionImageFilter() : stir::SeparableConvolutionImageFilter< elemT >
• SeparableGaussianArrayFilter() : stir::SeparableGaussianArrayFilter< num_dimensions, elemT >
• SeparableGaussianImageFilter() : stir::SeparableGaussianImageFilter< elemT >
• SeparableMetzArrayFilter() : stir::SeparableMetzArrayFilter< num_dimensions, elemT >
• set_additive_proj_data_sptr() : stir::GeneralisedObjectiveFunction< TargetT >, stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >
• set_alpha() : stir::PLSPrior< elemT >
• set_anatomical_filename() : stir::PLSPrior< elemT >
• set_anatomical_image_sptr() : stir::PLSPrior< elemT >
• set_anatomical_prior_sptr() : stir::KOSMAPOSLReconstruction< TargetT >
• set_att() : stir::NiftyPETHelper
• set_attenuation_correction_proj_data_sptr() : stir::ScatterEstimation
• set_attenuation_image_sptr() : stir::ProjMatrixByBinPinholeSPECTUB, stir::ProjMatrixByBinSPECTUB, stir::ScatterEstimation
• set_attenuation_threshold() : stir::ScatterSimulation
• set_attenuation_type() : stir::ProjMatrixByBinSPECTUB
• set_average_depth_of_interaction() : stir::Scanner
• set_axial_block_spacing() : stir::Scanner
• set_axial_crystal_spacing() : stir::Scanner
• set_azimuthal_angle_offset() : stir::ProjDataInfoCylindrical, stir::ProjDataInfoGenericNoArcCorr
• set_azimuthal_angle_sampling() : stir::ProjDataInfoCylindrical, stir::ProjDataInfoGenericNoArcCorr
• set_bed_position_horizontal() : stir::ProjDataInfo
• set_bed_position_vertical() : stir::ProjDataInfo
• set_bin() : stir::ProjMatrixElemsForOneBin
• set_bin_value() : stir::Bin, stir::ProjDataFromStream
• set_blocks_projdata_info() : stir::ProjDataInfoTests
• set_blood_counts_in_kBq() : stir::PlasmaSample
• set_byte_order() : stir::ecat::ecat6::ECAT6OutputFileFormat, stir::ecat::ecat7::ECAT7DynamicDiscretisedDensityOutputFileFormat, stir::ecat::ecat7::ECAT7OutputFileFormat, stir::ecat::ecat7::ECAT7ParametricDensityOutputFileFormat< DiscretisedDensityT >, stir::InterfileDynamicDiscretisedDensityOutputFileFormat, stir::InterfileOutputFileFormat, stir::InterfileParametricDiscretisedDensityOutputFileFormat< DiscDensityT >, stir::ITKOutputFileFormat, stir::MultiDynamicDiscretisedDensityOutputFileFormat, stir::MultiParametricDiscretisedDensityOutputFileFormat< DiscDensityT >, stir::OutputFileFormat< DataT >
• set_byte_order_and_type_of_numbers() : stir::OutputFileFormat< DataT >
• set_cache_max_size() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_cache_path() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_calibration_factor() : stir::ExamInfo
• set_coef() : stir::BSpline::BSplinesRegularGrid< num_dimensions, out_elemT, in_elemT, constantsT >
• set_collimator_file() : stir::ProjMatrixByBinPinholeSPECTUB
• set_crystal_map_file_name() : stir::Scanner
• set_cuda_device_id() : stir::NiftyPETHelper
• set_default_bin_size() : stir::Scanner
• set_default_num_arccorrected_bins() : stir::Scanner
• set_defaults() : stir::AnalyticReconstruction, stir::BackProjectorByBin, stir::BackProjectorByBinParallelproj, stir::BinNormalisation, stir::BinNormalisationPETFromComponents, stir::BinNormalisationWithCalibration, stir::CListModeDataROOT, stir::CreateTailMaskFromACFs, stir::CudaRelativeDifferencePrior< elemT >, stir::DistributedWorker< TargetT >, stir::ecat::ecat6::ECAT6OutputFileFormat, stir::ecat::ecat7::ECAT7DynamicDiscretisedDensityOutputFileFormat, stir::ecat::ecat7::ECAT7OutputFileFormat, stir::ecat::ecat7::ECAT7ParametricDensityOutputFileFormat< DiscretisedDensityT >, stir::Ellipsoid, stir::EllipsoidalCylinder, stir::FindMCNormFactors, stir::ForwardProjectorByBin, stir::ForwardProjectorByBinParallelproj, stir::FourierRebinning, stir::GatedSpatialTransformation, stir::GeneralisedObjectiveFunction< TargetT >, stir::GeneralisedPrior< DataT >, stir::GibbsPenalty< elemT, potentialT >, stir::HUToMuImageProcessor< TargetT >, stir::InputStreamFromROOTFile, stir::InputStreamFromROOTFileForCylindricalPET, stir::InputStreamFromROOTFileForECATPET, stir::InputStreamWithRecordsFromUPENN, stir::InputStreamWithRecordsFromUPENNbin, stir::InputStreamWithRecordsFromUPENNtxt, stir::InterfileDynamicDiscretisedDensityOutputFileFormat, stir::InterfileOutputFileFormat, stir::InterfileParametricDiscretisedDensityOutputFileFormat< DiscDensityT >, stir::IterativeReconstruction< TargetT >, stir::ITKOutputFileFormat, stir::KOSMAPOSLReconstruction< TargetT >, stir::LmToProjData, stir::LmToProjDataWithMC, stir::LogcoshPrior< elemT >, stir::MatchTrackerAndScanner, stir::MoveImage, stir::MoveProjData, stir::MultiDynamicDiscretisedDensityOutputFileFormat, stir::MultiParametricDiscretisedDensityOutputFileFormat< DiscDensityT >, stir::MyApp, stir::NonRigidObjectTransformationUsingBSplines< num_dimensions, elemT >, stir::OSMAPOSLReconstruction< TargetT >, stir::OSSPSReconstruction< TargetT >, stir::OutputFileFormat< DataT >, stir::ParametricQuadraticPrior< TargetT >, stir::ParseAndCreateFrom< OutputT, InputT, ParserT >, stir::ParseAndCreateFrom< DiscretisedDensity< 3, elemT >, ExamDataT >, stir::ParseAndCreateFrom< ParametricDiscretisedDensity< VoxelsOnCartesianGrid< elemT > >, ExamDataT >, stir::ParsingObject, stir::PatlakPlot, stir::PLSPrior< elemT >, stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndDynamicProjData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >, stir::ProjDataRebinning, stir::ProjMatrixByBin, stir::QuadraticPotential< elemT >, stir::QuadraticPrior< elemT >, stir::Reconstruction< TargetT >, stir::RelativeDifferencePotential< elemT >, stir::RelativeDifferencePrior< elemT >, stir::ReportMovement, stir::RigidObject3DMotion, stir::RigidObject3DMotionFromPolaris, stir::SAFIRCListmodeInputFileFormat< EventDataType >, stir::ScatterEstimation, stir::ScatterSimulation, stir::SeparableGaussianImageFilter< elemT >, stir::Shape3D, stir::Shape3DWithOrientation, stir::SingleScatterSimulation, stir::SqrtHessianRowSum< TargetT >, stir::TimeFrameMotion
• set_densel() : stir::ProjMatrixElemsForOneDensel
• set_density() : stir::DynamicDiscretisedDensity
• set_density_image_for_scatter_points() : stir::ScatterSimulation
• set_density_sptr() : stir::GatedDiscretisedDensity
• set_detection_position() : stir::CListEventCylindricalScannerWithViewTangRingRingEncoding< Derived >, stir::CListEventPENN, stir::CListEventScannerWithDiscreteDetectors< ProjDataInfoT >, stir::ecat::CListEventECAT8_32bit, stir::GE::RDF_HDF5::CListRecordGEHDF5
• set_detector_file() : stir::ProjMatrixByBinPinholeSPECTUB
• set_detector_map() : stir::DetectorCoordinateMap
• set_direction_vectors() : stir::Shape3DWithOrientation
• set_disable_output() : stir::Reconstruction< TargetT >
• set_downsample_scanner_bool() : stir::ScatterSimulation
• set_energy_information_from() : stir::ExamInfo
• set_energy_resolution() : stir::Scanner
• set_epsilon() : stir::RelativeDifferencePrior< elemT >
• set_eta() : stir::PLSPrior< elemT >
• set_exam_info() : stir::ExamData, stir::ScatterSimulation
• set_forward_projector_for_mask_sptr() : stir::ScatterEstimation
• set_gamma() : stir::RelativeDifferencePrior< elemT >
• set_get_position() : stir::CListModeDataLMF, stir::CListModeDataPENN, stir::CListModeDataROOT, stir::CListModeDataSAFIR< CListRecordT >, stir::ecat::CListModeDataECAT8_32bit, stir::ecat::ecat7::CListModeDataECAT< CListRecordT >, stir::GE::RDF_HDF5::CListModeDataGEHDF5, stir::GE::RDF_HDF5::InputStreamWithRecordsFromHDF5< RecordT >, stir::InputStreamFromROOTFile, stir::InputStreamWithRecords< RecordT, OptionsT >, stir::InputStreamWithRecordsFromUPENNtxt, stir::ListModeData, stir::ListModeData_dummy
• set_grid_spacing() : stir::DiscretisedDensityOnCartesianGrid< num_dimensions, elemT >
• set_high_energy_thres() : stir::ExamInfo
• set_if_decay_corrected() : stir::BloodFrameData
• set_inner_ring_radius() : stir::Scanner
• set_input() : stir::ForwardProjectorByBin, stir::ForwardProjectorByBinNiftyPET, stir::ForwardProjectorByBinParallelproj
• set_input_data() : stir::AnalyticReconstruction, stir::GeneralisedObjectiveFunction< TargetT >, stir::IterativeReconstruction< TargetT >, stir::LmToProjData, stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >, stir::Reconstruction< TargetT >, stir::ScatterEstimation
• set_input_proj_data_sptr() : stir::ProjDataRebinning, stir::ScatterEstimation
• set_inter_iteration_filter_interval() : stir::IterativeReconstruction< TargetT >
• set_inter_iteration_filter_ptr() : stir::IterativeReconstruction< TargetT >
• set_inter_update_filter_interval() : stir::OSMAPOSLReconstruction< TargetT >
• set_inter_update_filter_ptr() : stir::OSMAPOSLReconstruction< TargetT >
• set_intrinsic_azimuthal_tilt() : stir::Scanner
• set_is_uncalibrated() : stir::ModelMatrix< num_param >
• set_isotope_halflife() : stir::BloodFrameData, stir::PlasmaData
• set_kappa_filename() : stir::PLSPrior< elemT >
• set_kappa_sptr() : stir::CudaGibbsPenalty< elemT, PotentialT >, stir::GibbsPenalty< elemT, potentialT >, stir::LogcoshPrior< elemT >, stir::ParametricQuadraticPrior< TargetT >, stir::PLSPrior< elemT >, stir::QuadraticPrior< elemT >, stir::RelativeDifferencePrior< elemT >
• set_keep_all_views_in_cache() : stir::ProjMatrixByBinSPECTUB
• set_kernel() : stir::ArrayFilterUsingRealDFTWithPadding< num_dimensions, elemT >
• set_kernel_in_frequency_space() : stir::ArrayFilterUsingRealDFTWithPadding< num_dimensions, elemT >
• set_key_values() : stir::NonRigidObjectTransformationUsingBSplines< num_dimensions, elemT >, stir::OutputFileFormat< DataT >, stir::ParsingObject, stir::Shape3DWithOrientation
• set_kilovoltage_peak() : stir::HUToMuImageProcessor< TargetT >
• set_kmin() : stir::FourierRebinning
• set_label_index() : stir::DiscretisedShape3D
• set_low_energy_thres() : stir::ExamInfo
• set_manufacturer_name() : stir::HUToMuImageProcessor< TargetT >
• set_MAP_model() : stir::OSMAPOSLReconstruction< TargetT >
• set_map_sptr() : stir::CListEventSAFIR< Derived >
• set_mask_for_tags() : stir::RigidObject3DMotionFromPolaris
• set_mask_proj_data_sptr() : stir::ScatterEstimation
• set_max_axial_pos_num() : stir::ProjDataInfo, stir::ProjDataInfoCylindrical, stir::ProjDataInfoSubsetByView
• set_max_num_full_iterations() : stir::IterativeReconstruction< TargetT >
• set_max_num_non_arccorrected_bins() : stir::Scanner
• set_max_num_timing_poss() : stir::Scanner
• set_max_ring_difference() : stir::ProjDataInfoCylindrical
• set_max_segment_num_to_process() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_max_tangential_pos_num() : stir::ProjDataInfo, stir::ProjDataInfoSubsetByView
• set_max_time_drift_deviation() : stir::RigidObject3DMotionFromPolaris
• set_max_time_offset_deviation() : stir::RigidObject3DMotionFromPolaris
• set_maximum_relative_change() : stir::OSMAPOSLReconstruction< TargetT >
• set_min_axial_pos_num() : stir::ProjDataInfo, stir::ProjDataInfoCylindrical, stir::ProjDataInfoSubsetByView
• set_min_index() : stir::VectorWithOffset< T >
• set_min_ring_difference() : stir::ProjDataInfoCylindrical
• set_min_tangential_pos_num() : stir::ProjDataInfo, stir::ProjDataInfoSubsetByView
• set_minimum_relative_change() : stir::OSMAPOSLReconstruction< TargetT >
• set_model_matrix() : stir::PatlakPlot
• set_normalisation_sptr() : stir::GeneralisedObjectiveFunction< TargetT >, stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >, stir::ScatterEstimation
• set_num_axial_blocks_per_bucket() : stir::Scanner
• set_num_axial_crystals_per_block() : stir::Scanner
• set_num_axial_crystals_per_singles_unit() : stir::Scanner
• set_num_axial_poss_per_segment() : stir::ProjDataInfo, stir::ProjDataInfoCylindrical, stir::ProjDataInfoSubsetByView
• set_num_detector_layers() : stir::Scanner
• set_num_detectors_per_ring() : stir::Scanner
• set_num_gpu_chunks() : stir::ProjectorByBinPairUsingParallelproj
• set_num_rings() : stir::Scanner
• set_num_subiterations() : stir::IterativeReconstruction< TargetT >
• set_num_subsets() : stir::GeneralisedObjectiveFunction< TargetT >, stir::IterativeReconstruction< TargetT >, stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >, stir::SumOfGeneralisedObjectiveFunctions< ObjFuncT, TargetT, ParentT >
• set_num_tangential_poss() : stir::ProjDataInfo, stir::ProjDataInfoSubsetByView
• set_num_time_frames() : stir::TimeFrameDefinitions
• set_num_transaxial_blocks_per_bucket() : stir::Scanner
• set_num_transaxial_crystals_per_block() : stir::Scanner
• set_num_transaxial_crystals_per_singles_unit() : stir::Scanner
• set_num_views() : stir::ProjDataInfo, stir::ProjDataInfoCylindrical, stir::ProjDataInfoGenericNoArcCorr, stir::ProjDataInfoSubsetByView
• set_num_virtual_axial_crystals_per_block() : stir::Scanner
• set_num_virtual_transaxial_crystals_per_block() : stir::Scanner
• set_objective_function_sptr() : stir::IterativeReconstruction< TargetT >
• set_offset() : stir::VectorWithOffset< T >
• set_only_2D() : stir::PLSPrior< elemT >
• set_optional_ROOT_fields() : stir::InputStreamFromROOTFile
• set_origin() : stir::DiscretisedDensity< num_dimensions, elemT >, stir::DiscretisedShape3D, stir::Shape3D
• set_output_file_format_ptr() : stir::Reconstruction< TargetT >
• set_output_filename_prefix() : stir::ProjDataRebinning, stir::Reconstruction< TargetT >
• set_output_proj_data() : stir::ScatterSimulation
• set_output_projdata_sptr() : stir::LmToProjData
• set_parsing_object() : stir::KeyParser
• set_penalisation_factor() : stir::GeneralisedPrior< DataT >
• set_pixel_size() : stir::PixelsOnCartesianGrid< elemT >
• set_plane() : stir::VoxelsOnCartesianGrid< elemT >
• set_plasma_counts_in_kBq() : stir::PlasmaSample
• set_plot() : stir::PlasmaData
• set_post_data_processor() : stir::BackProjectorByBin
• set_post_processor_sptr() : stir::Reconstruction< TargetT >
• set_pre_data_processor() : stir::ForwardProjectorByBin
• set_prior_sptr() : stir::GeneralisedObjectiveFunction< TargetT >
• set_prompt() : stir::CListEvent, stir::CListEventDataNeuroLF, stir::CListEventDataSAFIR, stir::CListEventPENN, stir::CListRecordLMF, stir::ecat::CListEventECAT8_32bit, stir::ecat::ecat7::CListEventECAT966, stir::ecat::ecat7::CListRecordECAT962, stir::GE::RDF_HDF5::CListRecordGEHDF5
• set_radionuclide() : stir::ExamInfo
• set_radius() : stir::LORInCylinderCoordinates< coordT >
• set_randomise_subset_order() : stir::IterativeReconstruction< TargetT >
• set_randomly_place_scatter_points() : stir::ScatterSimulation
• set_recompute_cache() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_reconstruction_method_sptr() : stir::ScatterEstimation
• set_reference_energy() : stir::Scanner
• set_related_viewgrams() : stir::ProjData
• set_report_objective_function_values_interval() : stir::IterativeReconstruction< TargetT >
• set_resolution_model() : stir::ProjMatrixByBinSPECTUB
• set_ring_radii_for_all_views() : stir::ProjDataInfoCylindrical, stir::ProjDataInfoGenericNoArcCorr
• set_ring_spacing() : stir::ProjDataInfoCylindrical, stir::ProjDataInfoGenericNoArcCorr, stir::Scanner
• set_save_interval() : stir::IterativeReconstruction< TargetT >
• set_saved_get_positions() : stir::GE::RDF_HDF5::InputStreamWithRecordsFromHDF5< RecordT >, stir::InputStreamFromROOTFile, stir::InputStreamWithRecords< RecordT, OptionsT >
• set_scalar() : stir::LogcoshPrior< elemT >
• set_scale_to_write_data() : stir::OutputFileFormat< DataT >
• set_scanner_geometry() : stir::Scanner
• set_scanner_sptr() : stir::CListEventSAFIR< Derived >
• set_scanner_type() : stir::NiftyPETHelper
• set_segment() : stir::ProjData, stir::ProjDataFromStream, stir::ProjDataInMemory
• set_sensitivity_filename() : stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >
• set_shared_parsing_object() : stir::KeyParser
• set_sigma_m() : stir::KOSMAPOSLReconstruction< TargetT >
• set_singles() : stir::SinglesRatesForTimeFrames, stir::SinglesRatesForTimeSlices
• set_singles_readout_depth() : stir::InputStreamFromROOTFile
• set_sinogram() : stir::ProjData, stir::ProjDataFromStream, stir::ProjDataInMemory, stir::Segment< elemT >, stir::SegmentBySinogram< elemT >, stir::SegmentByView< elemT >
• set_sinogram_and_ring_coordinates() : stir::ecat::ecat7::CListEventDataECAT962, stir::ecat::ecat7::CListEventDataECAT966
• set_size_of_timing_poss() : stir::Scanner
• set_skip_lm_input_file() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_slope() : stir::HUToMuImageProcessor< TargetT >
• set_slope_filename() : stir::HUToMuImageProcessor< TargetT >
• set_span() : stir::NiftyPETHelper
• set_start_subiteration_num() : stir::IterativeReconstruction< TargetT >
• set_start_subset_num() : stir::IterativeReconstruction< TargetT >
• set_start_time_in_secs_since_1970() : stir::DynamicProjData
• set_subsensitivity_filenames() : stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >
• set_tangential_sampling() : stir::ProjDataInfoCylindricalArcCorr
• set_target_photon_energy() : stir::HUToMuImageProcessor< TargetT >
• set_template_proj_data_info_sptr() : stir::LmToProjData
• set_time_frame() : stir::TimeFrameDefinitions
• set_time_frame_definitions() : stir::PlasmaData
• set_time_in_s() : stir::PlasmaSample
• set_time_interval() : stir::SinglesRatesForTimeSlices
• set_timing_poss_sequence_in_stream() : stir::ProjDataFromStream
• set_timing_resolution() : stir::Scanner
• set_tof_mash_factor() : stir::ProjDataInfo, stir::ProjDataInfoCylindrical
• set_tolerance() : stir::RunTests
• set_transaxial_block_spacing() : stir::Scanner
• set_transaxial_crystal_spacing() : stir::Scanner
• set_type() : stir::Scanner
• set_type_of_numbers() : stir::ecat::ecat6::ECAT6OutputFileFormat, stir::ecat::ecat7::ECAT7DynamicDiscretisedDensityOutputFileFormat, stir::ecat::ecat7::ECAT7OutputFileFormat, stir::ecat::ecat7::ECAT7ParametricDensityOutputFileFormat< DiscretisedDensityT >, stir::OutputFileFormat< DataT >
• set_up() : stir::ArcCorrection, stir::BackProjectorByBin, stir::BackProjectorByBinNiftyPET, stir::BackProjectorByBinParallelproj, stir::BackProjectorByBinUsingInterpolation, stir::BackProjectorByBinUsingProjMatrixByBin, stir::BackProjectorByBinUsingSquareProjMatrixByBin, stir::BinNormalisation, stir::BinNormalisationFromAttenuationImage, stir::BinNormalisationFromML2D, stir::BinNormalisationFromProjData, stir::BinNormalisationPETFromComponents, stir::BinNormalisationWithCalibration, stir::ChainedBinNormalisation, stir::ColsherFilter, stir::CorrectProjDataApplication, stir::CudaGibbsPenalty< elemT, PotentialT >, stir::CudaRelativeDifferencePrior< elemT >, stir::DataProcessor< DataT >, stir::ecat::BinNormalisationFromECAT8, stir::ecat::ecat7::BinNormalisationFromECAT7, stir::FilterRootPrior< DataT >, stir::ForwardProjectorByBin, stir::ForwardProjectorByBinNiftyPET, stir::ForwardProjectorByBinParallelproj, stir::ForwardProjectorByBinUsingProjMatrixByBin, stir::ForwardProjectorByBinUsingRayTracing, stir::GE::RDF_HDF5::BinNormalisationFromGEHDF5, stir::GeneralisedObjectiveFunction< TargetT >, stir::GeneralisedPrior< DataT >, stir::GibbsPenalty< elemT, potentialT >, stir::InputStreamFromROOTFile, stir::InputStreamFromROOTFileForCylindricalPET, stir::InputStreamFromROOTFileForECATPET, stir::InputStreamWithRecordsFromUPENN, stir::InputStreamWithRecordsFromUPENNbin, stir::InputStreamWithRecordsFromUPENNtxt, stir::IterativeReconstruction< TargetT >, stir::LmToProjData, stir::LmToProjDataAbstract, stir::LmToProjDataWithMC, stir::NiftyPETHelper, stir::OSMAPOSLReconstruction< TargetT >, stir::OSSPSReconstruction< TargetT >, stir::ParametricQuadraticPrior< TargetT >, stir::PLSPrior< elemT >, stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >, stir::PostsmoothingBackProjectorByBin, stir::PostsmoothingForwardProjectorByBin, stir::PresmoothingForwardProjectorByBin, stir::ProjDataRebinning, stir::ProjectorByBinPair, stir::ProjectorByBinPairUsingParallelproj, stir::ProjectorByBinPairUsingProjMatrixByBin, stir::ProjMatrixByBin, stir::ProjMatrixByBinFromFile, stir::ProjMatrixByBinPinholeSPECTUB, stir::ProjMatrixByBinSinglePhoton, stir::ProjMatrixByBinSPECTUB, stir::ProjMatrixByBinUsingInterpolation, stir::ProjMatrixByBinUsingRayTracing, stir::ProjMatrixByBinUsingSolidAngle, stir::ProjMatrixByBinWithPositronRange, stir::ProjMatrixByDensel, stir::ProjMatrixByDenselOnCartesianGridUsingElement, stir::ProjMatrixByDenselUsingRayTracing, stir::QuadraticPrior< elemT >, stir::Reconstruction< TargetT >, stir::RelativeDifferencePrior< elemT >, stir::Scanner, stir::ScatterEstimation, stir::SingleScatterSimulation, stir::SumOfGeneralisedObjectiveFunctions< ObjFuncT, TargetT, ParentT >, stir::TestGPUProjectors
• set_up_before_sensitivity() : stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >
• set_up_image() : stir::TestGPUProjectors
• set_up_sino() : stir::TestGPUProjectors
• set_use_cache() : stir::ScatterSimulation
• set_use_subset_sensitivities() : stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >
• set_use_truncation() : stir::BackProjectorByBinNiftyPET, stir::ForwardProjectorByBinNiftyPET, stir::ProjectorByBinPairUsingNiftyPET
• set_variable() : stir::KeyParser
• set_verbose() : stir::NiftyPETHelper
• set_verbosity() : stir::BackProjectorByBinNiftyPET, stir::BackProjectorByBinParallelproj, stir::ForwardProjectorByBinNiftyPET, stir::ForwardProjectorByBinParallelproj, stir::ProjectorByBinPairUsingNiftyPET, stir::ProjectorByBinPairUsingParallelproj
• set_version_specific_keys() : stir::InterfileHeader, stir::MinimalInterfileHeader
• set_viewgram() : stir::ProjData, stir::ProjDataFromStream, stir::ProjDataInMemory, stir::Segment< elemT >, stir::SegmentBySinogram< elemT >, stir::SegmentByView< elemT >
• set_voxel_size() : stir::VoxelsOnCartesianGrid< elemT >
• set_weights() : stir::CudaGibbsPenalty< elemT, PotentialT >, stir::GibbsPenalty< elemT, potentialT >, stir::LogcoshPrior< elemT >, stir::ParametricQuadraticPrior< TargetT >, stir::QuadraticPrior< elemT >, stir::RelativeDifferencePrior< elemT >
• set_write_update_image() : stir::OSMAPOSLReconstruction< TargetT >
• setup_distributable_computation() : stir::DistributedWorker< TargetT >
• Shape3DWithOrientation() : stir::Shape3DWithOrientation
• shift_time() : stir::BloodFrameData, stir::PlasmaData
• signed_type() : stir::NumericType
• simulate_for_one_scatter_point() : stir::SingleScatterSimulation
• SingleScatterSimulation() : stir::SingleScatterSimulation
• SinglesRatesForTimeFrames() : stir::SinglesRatesForTimeFrames
• SinglesRatesForTimeSlices() : stir::SinglesRatesForTimeSlices
• SinglesRatesFromECAT7() : stir::ecat::ecat7::SinglesRatesFromECAT7
• SinglesRatesFromGEHDF5() : stir::GE::RDF_HDF5::SinglesRatesFromGEHDF5
• SinglesRatesFromSglFile() : stir::ecat::ecat7::SinglesRatesFromSglFile
• Sinogram() : stir::Sinogram< elemT >
• SinogramIndices() : stir::SinogramIndices
• size() : stir::FileSignature, stir::ProjMatrixElemsForOneBin, stir::ProjMatrixElemsForOneDensel, stir::VectorWithOffset< T >
• size_all() : stir::Array< num_dimensions, elemT >, stir::IndexRange< num_dimensions >, stir::IndexRange< 1 >, stir::ProjData, stir::ProjDataInfo
• size_in_bytes() : stir::NumericInfo< NUMBER >, stir::NumericInfo< double >, stir::NumericInfo< float >, stir::NumericInfo< signed char >, stir::NumericInfo< signed int >, stir::NumericInfo< signed long >, stir::NumericInfo< signed short >, stir::NumericInfo< unsigned char >, stir::NumericInfo< unsigned int >, stir::NumericInfo< unsigned long >, stir::NumericInfo< unsigned short >, stir::NumericType
• sort() : stir::ProjMatrixElemsForOneBin, stir::ProjMatrixElemsForOneDensel
• SpatialTransformation() : stir::SpatialTransformation
• SqrtHessianRowSum() : stir::SqrtHessianRowSum< TargetT >
• square_sum() : stir::ProjMatrixElemsForOneBin, stir::ProjMatrixElemsForOneDensel
• SRT2DReconstruction() : stir::SRT2DReconstruction
• SRT2DSPECTReconstruction() : stir::SRT2DSPECTReconstruction
• standard_segment_sequence() : stir::ProjData
• standardise_keyword() : stir::KeyParser
• start() : stir::DistributedWorker< TargetT >, stir::HighResWallClockTimer, stir::Timer
• start_accumulating_in_new_target() : stir::BackProjectorByBin, stir::BackProjectorByBinNiftyPET, stir::BackProjectorByBinParallelproj
• start_new_time_frame() : stir::LmToProjData, stir::LmToProjDataBootstrap< LmToProjDataT >, stir::LmToProjDataWithMC, stir::LmToProjDataWithRandomRejection< LmToProjDataT >, stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• start_parsing() : stir::KeyParser
• start_timers() : stir::TimedObject
• stop() : stir::HighResWallClockTimer, stir::Timer
• stop_parsing() : stir::KeyParser
• stop_timers() : stir::TimedObject
• subsets_are_approximately_balanced() : stir::GeneralisedObjectiveFunction< TargetT >
• succeeded() : stir::Succeeded
• sum() : stir::Array< num_dimensions, elemT >
• sum_positive() : stir::Array< num_dimensions, elemT >
• swap_if_necessary() : stir::ByteOrder
• swap_order() : stir::ByteOrder
• synchronise() : stir::RigidObject3DMotion, stir::RigidObject3DMotionFromPolaris