Class for binning list mode files with motion correction. More...
#include "stir_experimental/listmode/LmToProjDataWithMC.h"
Inheritance diagram for stir::LmToProjDataWithMC:
Public Member Functions | |
| LmToProjDataWithMC (const char *const par_filename) | |
| virtual void | get_bin_from_event (Bin &bin, const CListEvent &) const |
| void | process_new_time_event (const ListTime &time_event) override |
| will be called after a new timing event is found in the file | |
| Succeeded | set_up () override |
| Perform various checks. More... | |
 Public Member Functions inherited from stir::LmToProjData | |
| LmToProjData (const char *const par_filename) | |
| Constructor taking a filename for a parameter file. More... | |
| LmToProjData () | |
| Default constructor. More... | |
| void | process_data () override |
| This function does the actual work N.E: In order to keep the ToF functions separate from the non-TOF STIR this function just call the appropriate actual_process_data_with(out)_tof(). | |
| void | set_template_proj_data_info_sptr (shared_ptr< const ProjDataInfo >) |
| shared_ptr< ProjDataInfo > | get_template_proj_data_info_sptr () |
| virtual void | set_input_data (const shared_ptr< ExamData > &) |
| set input data More... | |
| virtual void | set_input_data (const std::string &filename) |
| set input data More... | |
| void | set_output_filename_prefix (const std::string &) |
| std::string | get_output_filename_prefix () const |
| void | set_output_projdata_sptr (shared_ptr< ProjData > &) |
| set projdata to be filled with output More... | |
| void | set_store_prompts (bool) |
| bool | get_store_prompts () const |
| void | set_store_delayeds (bool) |
| bool | get_store_delayeds () const |
| void | set_num_segments_in_memory (int) |
| int | get_num_segments_in_memory () const |
| void | set_num_events_to_store (long int) |
| long int | get_num_events_to_store () const |
| void | set_time_frame_definitions (const TimeFrameDefinitions &) |
| const TimeFrameDefinitions & | get_time_frame_definitions () const |
| Public Member Functions inherited from stir::LmToProjDataAbstract | |
| ~LmToProjDataAbstract () override | |
| Destructor. | |
| Public Member Functions inherited from stir::ParsingObject | |
| ParsingObject (const ParsingObject &) | |
| ParsingObject & | operator= (const ParsingObject &) |
| void | ask_parameters () |
| virtual std::string | parameter_info () |
| bool | parse (std::istream &f) |
| bool | parse (const char *const filename) |
Protected Member Functions | |
| void | start_new_time_frame (const unsigned int new_frame_num) override |
| will be called when a new time frame starts More... | |
| void | set_defaults () override |
| Set defaults before parsing. | |
| void | initialise_keymap () override |
| Initialise all keywords. | |
| bool | post_processing () override |
| This will be called at the end of the parsing. More... | |
| Protected Member Functions inherited from stir::LmToProjData | |
| virtual void | get_bin_from_event (Bin &bin, const ListEvent &) const |
| will be called to get the bin for a coincidence event More... | |
| int | get_compression_count (const Bin &bin) const |
| A function that should return the number of uncompressed bins in the current bin. More... | |
| void | do_post_normalisation (Bin &bin) const |
| Computes a post-normalisation factor (if any) for this bin. More... | |
| Protected Member Functions inherited from stir::ParsingObject | |
| virtual void | set_key_values () |
| This will be called before parsing or parameter_info is called. More... | |
Protected Attributes | |
| shared_ptr< RigidObject3DMotion > | ro3d_ptr |
| motion information | |
| bool | reference_position_is_average_position_in_frame |
| switch between constant reference position, or one for each frame | |
| shared_ptr< AbsTimeInterval > | _reference_abs_time_sptr |
| constant reference position (if used) | |
| Protected Attributes inherited from stir::LmToProjData | |
| shared_ptr< ListModeData > | lm_data_ptr |
| Pointer to the actual data. | |
| TimeFrameDefinitions | frame_defs |
| Time frames. | |
| double | current_time |
| stores the time (in secs) recorded in the previous timing event | |
| unsigned int | current_frame_num |
| stores the current frame number More... | |
| shared_ptr< const ProjDataInfo > | proj_data_info_cyl_uncompressed_ptr |
| Internal variable that will be used for pre-normalisation. More... | |
| bool | do_time_frame |
| variable that will be set according to if we are using time frames or num_events_to_store | |
| int | delayed_increment |
| A variable that will be set to 1,0 or -1, according to store_prompts and store_delayeds. | |
| bool | _already_setup |
| an internal bool variable to check if the object has been set-up or not | |
| std::string | input_filename |
| std::string | output_filename_prefix |
| std::string | template_proj_data_name |
| std::string | frame_definition_filename |
| frame definitions More... | |
| bool | do_pre_normalisation |
| bool | store_prompts |
| bool | store_delayeds |
| int | num_segments_in_memory |
| int | num_timing_poss_in_memory |
| long int | num_events_to_store |
| int | max_segment_num_to_process |
| bool | interactive |
| Toggle readable output on stdout or actual projdata. More... | |
| shared_ptr< ProjDataInfo > | template_proj_data_info_ptr |
| shared_ptr< BinNormalisation > | normalisation_ptr |
| This will be used for pre-normalisation. | |
| shared_ptr< BinNormalisation > | post_normalisation_ptr |
| This will be used for post-normalisation. | |
| shared_ptr< ProjData > | output_proj_data_sptr |
| This will be used to return the output directly, if set. | |
| Protected Attributes inherited from stir::ParsingObject | |
| KeyParser | parser |
Detailed Description
Class for binning list mode files with motion correction.
Implements LOR repositioning during bining of list mode data into sinograms.
Member Function Documentation
◆ set_up()
|
overridevirtual |
Perform various checks.
Note: this is currently called by post_processing(). This will change in version 5.0
Reimplemented from stir::LmToProjData.
◆ start_new_time_frame()
|
overrideprotectedvirtual |
will be called when a new time frame starts
The frame numbers start from 1.
Reimplemented from stir::LmToProjData.
References stir::RigidObject3DTransformation::get_quaternion(), stir::RigidObject3DTransformation::get_translation(), and stir::RigidObject3DTransformation::inverse().
◆ post_processing()
|
overrideprotectedvirtual |
This will be called at the end of the parsing.
- Returns
- false if everything OK, true if not
Reimplemented from stir::LmToProjData.
The documentation for this class was generated from the following files:
- /home/sirfuser/devel/STIRdistrib/STIR/src/include/stir_experimental/listmode/LmToProjDataWithMC.h
- /home/sirfuser/devel/STIRdistrib/STIR/src/experimental/listmode/LmToProjDataWithMC.cxx
