Here is a list of all documented class members with links to the class documentation for each member:

- s -

• safety_margin : stir::CreateTailMaskFromACFs
• sample_scatter_points() : stir::ScatterSimulation
• sampling_corresponds_to_physical_rings : stir::ProjDataInfoCylindrical
• sapyb() : stir::Array< num_dimensions, elemT > , stir::NumericVectorWithOffset< T, elemT > , stir::ProjData , stir::ProjDataInMemory
• save_get_position() : stir::CListModeDataLMF , stir::CListModeDataPENN , stir::CListModeDataROOT , stir::CListModeDataSAFIR< CListRecordT > , stir::ecat::CListModeDataECAT8_32bit , stir::ecat::ecat7::CListModeDataECAT< CListRecordT > , stir::GE::RDF_HDF5::CListModeDataGEHDF5 , stir::GE::RDF_HDF5::InputStreamWithRecordsFromHDF5< RecordT > , stir::InputStreamFromROOTFile , stir::InputStreamWithRecords< RecordT, OptionsT > , stir::InputStreamWithRecordsFromUPENNtxt , stir::ListModeData , stir::ListModeData_dummy
• save_intermediate_files : stir::FBP3DRPReconstruction
• save_interval : stir::IterativeReconstruction< TargetT >
• saved_get_positions : stir::InputStreamFromROOTFile
• SavedPosition : stir::ListModeData
• scalar : stir::LogcoshPrior< elemT >
• scale() : stir::CombinedShape3D< operation > , stir::DiscretisedShape3D , stir::Shape3D , stir::Shape3DWithOrientation
• scale_around_origin() : stir::Shape3D
• scale_model_matrix() : stir::ModelMatrix< num_param >
• scale_to_write_data : stir::OutputFileFormat< DataT >
• Scanner() : stir::Scanner
• scanner_sptr : stir::SinglesRates
• scatter_estimate() : stir::ScatterSimulation , stir::SingleScatterSimulation
• ScatterEstimation() : stir::ScatterEstimation
• ScatterSimulation() : stir::ScatterSimulation
• seed() : stir::GeneralisedPoissonNoiseGenerator , stir::LmToProjDataBootstrap< LmToProjDataT > , stir::LmToProjDataWithRandomRejection< LmToProjDataT >
• segment_num() : stir::SegmentIndices
• SegmentBySinogram() : stir::SegmentBySinogram< elemT >
• SegmentByView() : stir::SegmentByView< elemT >
• SegmentIndices() : stir::SegmentIndices
• sens_backprojector_sptr : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >
• sens_proj_data_info_sptr : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >
• SeparableArrayFunctionObject() : stir::SeparableArrayFunctionObject< num_dimensions, elemT >
• SeparableCartesianMetzImageFilter() : stir::SeparableCartesianMetzImageFilter< elemT >
• SeparableConvolutionImageFilter() : stir::SeparableConvolutionImageFilter< elemT >
• SeparableGaussianArrayFilter() : stir::SeparableGaussianArrayFilter< num_dimensions, elemT >
• SeparableGaussianImageFilter() : stir::SeparableGaussianImageFilter< elemT >
• SeparableMetzArrayFilter() : stir::SeparableMetzArrayFilter< num_dimensions, elemT >
• separator : stir::FilePath
• set_additive_proj_data_sptr() : stir::GeneralisedObjectiveFunction< TargetT > , stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >
• set_alpha() : stir::PLSPrior< elemT >
• set_anatomical_filename() : stir::PLSPrior< elemT >
• set_anatomical_image_sptr() : stir::PLSPrior< elemT >
• set_anatomical_prior_sptr() : stir::KOSMAPOSLReconstruction< TargetT >
• set_att() : stir::NiftyPETHelper
• set_attenuation_correction_proj_data_sptr() : stir::ScatterEstimation
• set_attenuation_image_sptr() : stir::ProjMatrixByBinPinholeSPECTUB , stir::ProjMatrixByBinSPECTUB , stir::ScatterEstimation
• set_attenuation_threshold() : stir::ScatterSimulation
• set_attenuation_type() : stir::ProjMatrixByBinSPECTUB
• set_average_depth_of_interaction() : stir::Scanner
• set_axial_block_spacing() : stir::Scanner
• set_axial_crystal_spacing() : stir::Scanner
• set_azimuthal_angle_offset() : stir::ProjDataInfoCylindrical
• set_azimuthal_angle_sampling() : stir::ProjDataInfoCylindrical
• set_bed_position_horizontal() : stir::ProjDataInfo
• set_bed_position_vertical() : stir::ProjDataInfo
• set_bin() : stir::ProjMatrixElemsForOneBin
• set_bin_value() : stir::Bin , stir::ProjDataFromStream
• set_blocks_projdata_info() : stir::ProjDataInfoTests
• set_blood_counts_in_kBq() : stir::PlasmaSample
• set_byte_order() : stir::ecat::ecat6::ECAT6OutputFileFormat , stir::ecat::ecat7::ECAT7DynamicDiscretisedDensityOutputFileFormat , stir::ecat::ecat7::ECAT7OutputFileFormat , stir::ecat::ecat7::ECAT7ParametricDensityOutputFileFormat< DiscretisedDensityT > , stir::InterfileDynamicDiscretisedDensityOutputFileFormat , stir::InterfileOutputFileFormat , stir::InterfileParametricDiscretisedDensityOutputFileFormat< DiscDensityT > , stir::ITKOutputFileFormat , stir::MultiDynamicDiscretisedDensityOutputFileFormat , stir::MultiParametricDiscretisedDensityOutputFileFormat< DiscDensityT > , stir::OutputFileFormat< DataT >
• set_byte_order_and_type_of_numbers() : stir::OutputFileFormat< DataT >
• set_cache_max_size() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_cache_path() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_calibration_factor() : stir::ExamInfo
• set_coef() : stir::BSpline::BSplinesRegularGrid< num_dimensions, out_elemT, in_elemT, constantsT >
• set_collimator_file() : stir::ProjMatrixByBinPinholeSPECTUB
• set_crystal_map_file_name() : stir::Scanner
• set_cuda_device_id() : stir::NiftyPETHelper
• set_default_bin_size() : stir::Scanner
• set_default_num_arccorrected_bins() : stir::Scanner
• set_defaults() : stir::AnalyticReconstruction , stir::BackProjectorByBin , stir::BackProjectorByBinParallelproj , stir::BinNormalisation , stir::BinNormalisationPETFromComponents , stir::BinNormalisationWithCalibration , stir::CListModeDataROOT , stir::CreateTailMaskFromACFs , stir::CudaRelativeDifferencePrior< elemT > , stir::DistributedWorker< TargetT > , stir::ecat::ecat6::ECAT6OutputFileFormat , stir::ecat::ecat7::ECAT7DynamicDiscretisedDensityOutputFileFormat , stir::ecat::ecat7::ECAT7OutputFileFormat , stir::ecat::ecat7::ECAT7ParametricDensityOutputFileFormat< DiscretisedDensityT > , stir::Ellipsoid , stir::EllipsoidalCylinder , stir::FindMCNormFactors , stir::ForwardProjectorByBin , stir::ForwardProjectorByBinParallelproj , stir::FourierRebinning , stir::GatedSpatialTransformation , stir::GeneralisedObjectiveFunction< TargetT > , stir::GeneralisedPrior< DataT > , stir::HUToMuImageProcessor< TargetT > , stir::InputStreamFromROOTFile , stir::InputStreamFromROOTFileForCylindricalPET , stir::InputStreamFromROOTFileForECATPET , stir::InputStreamWithRecordsFromUPENN , stir::InputStreamWithRecordsFromUPENNbin , stir::InputStreamWithRecordsFromUPENNtxt , stir::InterfileDynamicDiscretisedDensityOutputFileFormat , stir::InterfileOutputFileFormat , stir::InterfileParametricDiscretisedDensityOutputFileFormat< DiscDensityT > , stir::IterativeReconstruction< TargetT > , stir::ITKOutputFileFormat , stir::KOSMAPOSLReconstruction< TargetT > , stir::LmToProjData , stir::LmToProjDataWithMC , stir::LogcoshPrior< elemT > , stir::MatchTrackerAndScanner , stir::MoveImage , stir::MoveProjData , stir::MultiDynamicDiscretisedDensityOutputFileFormat , stir::MultiParametricDiscretisedDensityOutputFileFormat< DiscDensityT > , stir::MyApp , stir::NonRigidObjectTransformationUsingBSplines< num_dimensions, elemT > , stir::OSMAPOSLReconstruction< TargetT > , stir::OSSPSReconstruction< TargetT > , stir::OutputFileFormat< DataT > , stir::ParametricQuadraticPrior< TargetT > , stir::ParseAndCreateFrom< OutputT, InputT, ParserT > , stir::ParsingObject , stir::PatlakPlot , stir::PLSPrior< elemT > , stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndDynamicProjData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT > , stir::ProjDataRebinning , stir::ProjMatrixByBin , stir::QuadraticPrior< elemT > , stir::Reconstruction< TargetT > , stir::RelativeDifferencePrior< elemT > , stir::ReportMovement , stir::RigidObject3DMotion , stir::RigidObject3DMotionFromPolaris , stir::SAFIRCListmodeInputFileFormat< EventDataType > , stir::ScatterEstimation , stir::ScatterSimulation , stir::SeparableGaussianImageFilter< elemT > , stir::Shape3D , stir::Shape3DWithOrientation , stir::SingleScatterSimulation , stir::SqrtHessianRowSum< TargetT > , stir::TimeFrameMotion
• set_densel() : stir::ProjMatrixElemsForOneDensel
• set_density() : stir::DynamicDiscretisedDensity
• set_density_image_for_scatter_points() : stir::ScatterSimulation
• set_density_sptr() : stir::GatedDiscretisedDensity
• set_detection_position() : stir::CListEventCylindricalScannerWithViewTangRingRingEncoding< Derived > , stir::CListEventPENN , stir::CListEventScannerWithDiscreteDetectors< ProjDataInfoT > , stir::ecat::CListEventECAT8_32bit , stir::GE::RDF_HDF5::CListRecordGEHDF5
• set_detector_file() : stir::ProjMatrixByBinPinholeSPECTUB
• set_detector_map() : stir::DetectorCoordinateMap
• set_direction_vectors() : stir::Shape3DWithOrientation
• set_disable_output() : stir::Reconstruction< TargetT >
• set_downsample_scanner_bool() : stir::ScatterSimulation
• set_energy_information_from() : stir::ExamInfo
• set_energy_resolution() : stir::Scanner
• set_epsilon() : stir::RelativeDifferencePrior< elemT >
• set_eta() : stir::PLSPrior< elemT >
• set_exam_info() : stir::ExamData , stir::ScatterSimulation
• set_gamma() : stir::RelativeDifferencePrior< elemT >
• set_get_position() : stir::CListModeDataLMF , stir::CListModeDataPENN , stir::CListModeDataROOT , stir::CListModeDataSAFIR< CListRecordT > , stir::ecat::CListModeDataECAT8_32bit , stir::ecat::ecat7::CListModeDataECAT< CListRecordT > , stir::GE::RDF_HDF5::CListModeDataGEHDF5 , stir::GE::RDF_HDF5::InputStreamWithRecordsFromHDF5< RecordT > , stir::InputStreamFromROOTFile , stir::InputStreamWithRecords< RecordT, OptionsT > , stir::InputStreamWithRecordsFromUPENNtxt , stir::ListModeData , stir::ListModeData_dummy
• set_grid_spacing() : stir::DiscretisedDensityOnCartesianGrid< num_dimensions, elemT >
• set_high_energy_thres() : stir::ExamInfo
• set_if_decay_corrected() : stir::BloodFrameData
• set_inner_ring_radius() : stir::Scanner
• set_input() : stir::ForwardProjectorByBin , stir::ForwardProjectorByBinNiftyPET , stir::ForwardProjectorByBinParallelproj
• set_input_data() : stir::AnalyticReconstruction , stir::GeneralisedObjectiveFunction< TargetT > , stir::IterativeReconstruction< TargetT > , stir::LmToProjData , stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT > , stir::Reconstruction< TargetT > , stir::ScatterEstimation
• set_input_proj_data_sptr() : stir::ProjDataRebinning , stir::ScatterEstimation
• set_inter_iteration_filter_interval() : stir::IterativeReconstruction< TargetT >
• set_inter_iteration_filter_ptr() : stir::IterativeReconstruction< TargetT >
• set_inter_update_filter_interval() : stir::OSMAPOSLReconstruction< TargetT >
• set_inter_update_filter_ptr() : stir::OSMAPOSLReconstruction< TargetT >
• set_intrinsic_azimuthal_tilt() : stir::Scanner
• set_is_uncalibrated() : stir::ModelMatrix< num_param >
• set_isotope_halflife() : stir::BloodFrameData , stir::PlasmaData
• set_kappa_filename() : stir::PLSPrior< elemT >
• set_kappa_sptr() : stir::LogcoshPrior< elemT > , stir::ParametricQuadraticPrior< TargetT > , stir::PLSPrior< elemT > , stir::QuadraticPrior< elemT > , stir::RelativeDifferencePrior< elemT >
• set_keep_all_views_in_cache() : stir::ProjMatrixByBinSPECTUB
• set_kernel() : stir::ArrayFilterUsingRealDFTWithPadding< num_dimensions, elemT >
• set_kernel_in_frequency_space() : stir::ArrayFilterUsingRealDFTWithPadding< num_dimensions, elemT >
• set_key_values() : stir::NonRigidObjectTransformationUsingBSplines< num_dimensions, elemT > , stir::OutputFileFormat< DataT > , stir::ParsingObject , stir::Shape3DWithOrientation
• set_kilovoltage_peak() : stir::HUToMuImageProcessor< TargetT >
• set_kmin() : stir::FourierRebinning
• set_label_index() : stir::DiscretisedShape3D
• set_low_energy_thres() : stir::ExamInfo
• set_manufacturer_name() : stir::HUToMuImageProcessor< TargetT >
• set_MAP_model() : stir::OSMAPOSLReconstruction< TargetT >
• set_map_sptr() : stir::CListEventSAFIR< Derived >
• set_mask_for_tags() : stir::RigidObject3DMotionFromPolaris
• set_mask_proj_data_sptr() : stir::ScatterEstimation
• set_max_axial_pos_num() : stir::ProjDataInfo , stir::ProjDataInfoCylindrical , stir::ProjDataInfoSubsetByView
• set_max_num_full_iterations() : stir::IterativeReconstruction< TargetT >
• set_max_num_non_arccorrected_bins() : stir::Scanner
• set_max_num_timing_poss() : stir::Scanner
• set_max_ring_difference() : stir::ProjDataInfoCylindrical
• set_max_segment_num_to_process() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_max_tangential_pos_num() : stir::ProjDataInfo , stir::ProjDataInfoSubsetByView
• set_max_time_drift_deviation() : stir::RigidObject3DMotionFromPolaris
• set_max_time_offset_deviation() : stir::RigidObject3DMotionFromPolaris
• set_maximum_relative_change() : stir::OSMAPOSLReconstruction< TargetT >
• set_min_axial_pos_num() : stir::ProjDataInfo , stir::ProjDataInfoCylindrical , stir::ProjDataInfoSubsetByView
• set_min_index() : stir::VectorWithOffset< T >
• set_min_ring_difference() : stir::ProjDataInfoCylindrical
• set_min_tangential_pos_num() : stir::ProjDataInfo , stir::ProjDataInfoSubsetByView
• set_minimum_relative_change() : stir::OSMAPOSLReconstruction< TargetT >
• set_model_matrix() : stir::PatlakPlot
• set_normalisation_sptr() : stir::GeneralisedObjectiveFunction< TargetT > , stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT > , stir::ScatterEstimation
• set_num_axial_blocks_per_bucket() : stir::Scanner
• set_num_axial_crystals_per_block() : stir::Scanner
• set_num_axial_crystals_per_singles_unit() : stir::Scanner
• set_num_axial_poss_per_segment() : stir::ProjDataInfo , stir::ProjDataInfoCylindrical , stir::ProjDataInfoSubsetByView
• set_num_detector_layers() : stir::Scanner
• set_num_detectors_per_ring() : stir::Scanner
• set_num_rings() : stir::Scanner
• set_num_subiterations() : stir::IterativeReconstruction< TargetT >
• set_num_subsets() : stir::GeneralisedObjectiveFunction< TargetT > , stir::IterativeReconstruction< TargetT > , stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT > , stir::SumOfGeneralisedObjectiveFunctions< ObjFuncT, TargetT, ParentT >
• set_num_tangential_poss() : stir::ProjDataInfo , stir::ProjDataInfoSubsetByView
• set_num_time_frames() : stir::TimeFrameDefinitions
• set_num_transaxial_blocks_per_bucket() : stir::Scanner
• set_num_transaxial_crystals_per_block() : stir::Scanner
• set_num_transaxial_crystals_per_singles_unit() : stir::Scanner
• set_num_views() : stir::ProjDataInfo , stir::ProjDataInfoCylindrical , stir::ProjDataInfoGeneric , stir::ProjDataInfoSubsetByView
• set_num_virtual_axial_crystals_per_block() : stir::Scanner
• set_num_virtual_transaxial_crystals_per_block() : stir::Scanner
• set_objective_function_sptr() : stir::IterativeReconstruction< TargetT >
• set_offset() : stir::VectorWithOffset< T >
• set_only_2D() : stir::PLSPrior< elemT >
• set_optional_ROOT_fields() : stir::InputStreamFromROOTFile
• set_origin() : stir::DiscretisedDensity< num_dimensions, elemT > , stir::DiscretisedShape3D , stir::Shape3D
• set_output_file_format_ptr() : stir::Reconstruction< TargetT >
• set_output_filename_prefix() : stir::ProjDataRebinning , stir::Reconstruction< TargetT >
• set_output_proj_data() : stir::ScatterSimulation
• set_output_projdata_sptr() : stir::LmToProjData
• set_parsing_object() : stir::KeyParser
• set_penalisation_factor() : stir::GeneralisedPrior< DataT >
• set_pixel_size() : stir::PixelsOnCartesianGrid< elemT >
• set_plane() : stir::VoxelsOnCartesianGrid< elemT >
• set_plasma_counts_in_kBq() : stir::PlasmaSample
• set_plot() : stir::PlasmaData
• set_post_data_processor() : stir::BackProjectorByBin
• set_post_processor_sptr() : stir::Reconstruction< TargetT >
• set_pre_data_processor() : stir::ForwardProjectorByBin
• set_prior_sptr() : stir::GeneralisedObjectiveFunction< TargetT >
• set_prompt() : stir::CListEvent , stir::CListEventDataNeuroLF , stir::CListEventDataSAFIR , stir::CListEventPENN , stir::CListRecordLMF , stir::ecat::CListEventECAT8_32bit , stir::ecat::ecat7::CListEventECAT966 , stir::ecat::ecat7::CListRecordECAT962 , stir::GE::RDF_HDF5::CListRecordGEHDF5
• set_radionuclide() : stir::ExamInfo
• set_radius() : stir::LORInCylinderCoordinates< coordT >
• set_randomise_subset_order() : stir::IterativeReconstruction< TargetT >
• set_randomly_place_scatter_points() : stir::ScatterSimulation
• set_recompute_cache() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_reconstruction_method_sptr() : stir::ScatterEstimation
• set_reference_energy() : stir::Scanner
• set_related_viewgrams() : stir::ProjData
• set_report_objective_function_values_interval() : stir::IterativeReconstruction< TargetT >
• set_resolution_model() : stir::ProjMatrixByBinSPECTUB
• set_ring_radii_for_all_views() : stir::ProjDataInfoCylindrical
• set_ring_spacing() : stir::ProjDataInfoCylindrical , stir::Scanner
• set_save_interval() : stir::IterativeReconstruction< TargetT >
• set_saved_get_positions() : stir::GE::RDF_HDF5::InputStreamWithRecordsFromHDF5< RecordT > , stir::InputStreamFromROOTFile , stir::InputStreamWithRecords< RecordT, OptionsT >
• set_scalar() : stir::LogcoshPrior< elemT >
• set_scale_to_write_data() : stir::OutputFileFormat< DataT >
• set_scanner_geometry() : stir::Scanner
• set_scanner_sptr() : stir::CListEventSAFIR< Derived >
• set_scanner_type() : stir::NiftyPETHelper
• set_segment() : stir::ProjData , stir::ProjDataFromStream , stir::ProjDataInMemory
• set_sensitivity_filename() : stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >
• set_shared_parsing_object() : stir::KeyParser
• set_sigma_m() : stir::KOSMAPOSLReconstruction< TargetT >
• set_singles() : stir::SinglesRatesForTimeFrames , stir::SinglesRatesForTimeSlices
• set_singles_readout_depth() : stir::InputStreamFromROOTFile
• set_sinogram() : stir::ProjData , stir::ProjDataFromStream , stir::ProjDataInMemory , stir::Segment< elemT > , stir::SegmentBySinogram< elemT > , stir::SegmentByView< elemT >
• set_sinogram_and_ring_coordinates() : stir::ecat::ecat7::CListEventDataECAT962 , stir::ecat::ecat7::CListEventDataECAT966
• set_size_of_timing_poss() : stir::Scanner
• set_skip_lm_input_file() : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• set_slope() : stir::HUToMuImageProcessor< TargetT >
• set_slope_filename() : stir::HUToMuImageProcessor< TargetT >
• set_span() : stir::NiftyPETHelper
• set_start_subiteration_num() : stir::IterativeReconstruction< TargetT >
• set_start_subset_num() : stir::IterativeReconstruction< TargetT >
• set_start_time_in_secs_since_1970() : stir::DynamicProjData
• set_subsensitivity_filenames() : stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >
• set_tangential_sampling() : stir::ProjDataInfoCylindricalArcCorr
• set_target_photon_energy() : stir::HUToMuImageProcessor< TargetT >
• set_time_frame() : stir::TimeFrameDefinitions
• set_time_frame_definitions() : stir::PlasmaData
• set_time_in_s() : stir::PlasmaSample
• set_time_interval() : stir::SinglesRatesForTimeSlices
• set_timing_poss_sequence_in_stream() : stir::ProjDataFromStream
• set_timing_resolution() : stir::Scanner
• set_tof_mash_factor() : stir::ProjDataInfo , stir::ProjDataInfoCylindrical
• set_tolerance() : stir::RunTests
• set_transaxial_block_spacing() : stir::Scanner
• set_transaxial_crystal_spacing() : stir::Scanner
• set_type() : stir::Scanner
• set_type_of_numbers() : stir::ecat::ecat6::ECAT6OutputFileFormat , stir::ecat::ecat7::ECAT7DynamicDiscretisedDensityOutputFileFormat , stir::ecat::ecat7::ECAT7OutputFileFormat , stir::ecat::ecat7::ECAT7ParametricDensityOutputFileFormat< DiscretisedDensityT > , stir::OutputFileFormat< DataT >
• set_up() : stir::ArcCorrection , stir::BackProjectorByBin , stir::BackProjectorByBinNiftyPET , stir::BackProjectorByBinParallelproj , stir::BackProjectorByBinUsingInterpolation , stir::BackProjectorByBinUsingProjMatrixByBin , stir::BackProjectorByBinUsingSquareProjMatrixByBin , stir::BinNormalisation , stir::BinNormalisationFromAttenuationImage , stir::BinNormalisationFromML2D , stir::BinNormalisationFromProjData , stir::BinNormalisationPETFromComponents , stir::BinNormalisationWithCalibration , stir::ChainedBinNormalisation , stir::ColsherFilter , stir::CorrectProjDataApplication , stir::CudaRelativeDifferencePrior< elemT > , stir::DataProcessor< DataT > , stir::ecat::BinNormalisationFromECAT8 , stir::ecat::ecat7::BinNormalisationFromECAT7 , stir::FBP2DReconstruction , stir::FilterRootPrior< DataT > , stir::ForwardProjectorByBin , stir::ForwardProjectorByBinNiftyPET , stir::ForwardProjectorByBinParallelproj , stir::ForwardProjectorByBinUsingProjMatrixByBin , stir::ForwardProjectorByBinUsingRayTracing , stir::GE::RDF_HDF5::BinNormalisationFromGEHDF5 , stir::GeneralisedObjectiveFunction< TargetT > , stir::GeneralisedPrior< DataT > , stir::InputStreamFromROOTFile , stir::InputStreamFromROOTFileForCylindricalPET , stir::InputStreamFromROOTFileForECATPET , stir::InputStreamWithRecordsFromUPENN , stir::InputStreamWithRecordsFromUPENNbin , stir::InputStreamWithRecordsFromUPENNtxt , stir::IterativeReconstruction< TargetT > , stir::LmToProjData , stir::LmToProjDataAbstract , stir::LmToProjDataWithMC , stir::NiftyPETHelper , stir::OSMAPOSLReconstruction< TargetT > , stir::OSSPSReconstruction< TargetT > , stir::ParametricQuadraticPrior< TargetT > , stir::PLSPrior< elemT > , stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > , stir::PostsmoothingBackProjectorByBin , stir::PostsmoothingForwardProjectorByBin , stir::PresmoothingForwardProjectorByBin , stir::ProjDataRebinning , stir::ProjectorByBinPair , stir::ProjectorByBinPairUsingParallelproj , stir::ProjectorByBinPairUsingProjMatrixByBin , stir::ProjMatrixByBin , stir::ProjMatrixByBinFromFile , stir::ProjMatrixByBinPinholeSPECTUB , stir::ProjMatrixByBinSinglePhoton , stir::ProjMatrixByBinSPECTUB , stir::ProjMatrixByBinUsingInterpolation , stir::ProjMatrixByBinUsingRayTracing , stir::ProjMatrixByBinUsingSolidAngle , stir::ProjMatrixByBinWithPositronRange , stir::ProjMatrixByDensel , stir::ProjMatrixByDenselOnCartesianGridUsingElement , stir::ProjMatrixByDenselUsingRayTracing , stir::QuadraticPrior< elemT > , stir::Reconstruction< TargetT > , stir::RelativeDifferencePrior< elemT > , stir::Scanner , stir::ScatterEstimation , stir::SingleScatterSimulation , stir::SumOfGeneralisedObjectiveFunctions< ObjFuncT, TargetT, ParentT > , stir::TestGPUProjectors
• set_up_before_sensitivity() : stir::PoissonLogLikelihoodWithLinearKineticModelAndDynamicProjectionData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndGatedProjDataWithMotion< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData< TargetT >
• set_up_image() : stir::TestGPUProjectors
• set_up_sino() : stir::TestGPUProjectors
• set_use_cache() : stir::ScatterSimulation
• set_use_subset_sensitivities() : stir::PoissonLogLikelihoodWithLinearModelForMean< TargetT >
• set_use_truncation() : stir::BackProjectorByBinNiftyPET , stir::ForwardProjectorByBinNiftyPET , stir::ForwardProjectorByBinParallelproj , stir::ProjectorByBinPairUsingNiftyPET
• set_variable() : stir::KeyParser
• set_verbose() : stir::NiftyPETHelper
• set_verbosity() : stir::BackProjectorByBinNiftyPET , stir::BackProjectorByBinParallelproj , stir::ForwardProjectorByBinNiftyPET , stir::ForwardProjectorByBinParallelproj , stir::ProjectorByBinPairUsingNiftyPET , stir::ProjectorByBinPairUsingParallelproj
• set_version_specific_keys() : stir::InterfileHeader , stir::MinimalInterfileHeader
• set_viewgram() : stir::ProjData , stir::ProjDataFromStream , stir::ProjDataInMemory , stir::Segment< elemT > , stir::SegmentBySinogram< elemT > , stir::SegmentByView< elemT >
• set_voxel_size() : stir::VoxelsOnCartesianGrid< elemT >
• set_weights() : stir::LogcoshPrior< elemT > , stir::ParametricQuadraticPrior< TargetT > , stir::QuadraticPrior< elemT > , stir::RelativeDifferencePrior< elemT >
• set_write_update_image() : stir::OSMAPOSLReconstruction< TargetT >
• setup_distributable_computation() : stir::DistributedWorker< TargetT >
• Shape3DWithOrientation() : stir::Shape3DWithOrientation
• shift_time() : stir::BloodFrameData , stir::PlasmaData
• signed_type() : stir::NumericType
• simulate_for_one_scatter_point() : stir::SingleScatterSimulation
• singles_readout_depth : stir::InputStreamFromROOTFile
• SingleScatterSimulation() : stir::SingleScatterSimulation
• SinglesRatesForTimeFrames() : stir::SinglesRatesForTimeFrames
• SinglesRatesForTimeSlices() : stir::SinglesRatesForTimeSlices
• SinglesRatesFromECAT7() : stir::ecat::ecat7::SinglesRatesFromECAT7
• SinglesRatesFromGEHDF5() : stir::GE::RDF_HDF5::SinglesRatesFromGEHDF5
• SinglesRatesFromSglFile() : stir::ecat::ecat7::SinglesRatesFromSglFile
• sino_stream : stir::ProjDataFromStream
• Sinogram() : stir::Sinogram< elemT >
• SinogramIndices() : stir::SinogramIndices
• size() : stir::FileSignature , stir::ProjMatrixElemsForOneBin , stir::ProjMatrixElemsForOneDensel , stir::VectorWithOffset< T >
• size_all() : stir::Array< num_dimensions, elemT > , stir::Array< 1, elemT > , stir::IndexRange< num_dimensions > , stir::IndexRange< 1 > , stir::ProjData , stir::ProjDataInfo
• size_in_bytes() : stir::NumericInfo< NUMBER > , stir::NumericType
• skip_balanced_subsets : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin< TargetT >
• skip_lm_input_file : stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• sort() : stir::ProjMatrixElemsForOneBin , stir::ProjMatrixElemsForOneDensel
• SpatialTransformation() : stir::SpatialTransformation
• SqrtHessianRowSum() : stir::SqrtHessianRowSum< TargetT >
• square_sum() : stir::ProjMatrixElemsForOneBin , stir::ProjMatrixElemsForOneDensel
• standard_segment_sequence() : stir::ProjData
• standardise_keyword() : stir::KeyParser
• start() : stir::DistributedWorker< TargetT > , stir::HighResWallClockTimer , stir::Timer
• start_accumulating_in_new_target() : stir::BackProjectorByBin , stir::BackProjectorByBinNiftyPET , stir::BackProjectorByBinParallelproj
• start_new_time_frame() : stir::LmToProjData , stir::LmToProjDataBootstrap< LmToProjDataT > , stir::LmToProjDataWithMC , stir::LmToProjDataWithRandomRejection< LmToProjDataT > , stir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeData< TargetT >
• start_parsing() : stir::KeyParser
• start_subiteration_num : stir::IterativeReconstruction< TargetT >
• start_subset_num : stir::IterativeReconstruction< TargetT >
• start_timers() : stir::TimedObject
• starting_stream_position : stir::InputStreamFromROOTFile
• stop() : stir::HighResWallClockTimer , stir::Timer
• stop_parsing() : stir::KeyParser
• stop_timers() : stir::TimedObject
• StorageOrder : stir::SegmentBySinogram< elemT > , stir::SegmentByView< elemT >
• subiteration_num : stir::IterativeReconstruction< TargetT >
• subsets_are_approximately_balanced() : stir::GeneralisedObjectiveFunction< TargetT >
• succeeded() : stir::Succeeded
• sum() : stir::Array< num_dimensions, elemT > , stir::Array< 1, elemT >
• sum_positive() : stir::Array< num_dimensions, elemT > , stir::Array< 1, elemT >
• swap : stir::Array< num_dimensions, elemT > , stir::Array< 1, elemT > , stir::NumericVectorWithOffset< T, elemT > , stir::VectorWithOffset< T >
• swap_if_necessary() : stir::ByteOrder
• swap_order() : stir::ByteOrder
• swapped : stir::ByteOrder
• synchronise() : stir::RigidObject3DMotion , stir::RigidObject3DMotionFromPolaris