A class for storing plasma and blood samples of a single study. More...

#include "stir/modelling/PlasmaData.h"

Public Types
typedef plot_type::const_iterator	const_iterator

Public Member Functions
	PlasmaData (const std::vector< PlasmaSample > &plasma_blood_plot)
	constructor giving a vector
	PlasmaData ()
	default constructor
	~PlasmaData ()
	default constructor
void	read_plasma_data (const std::string input_string)
	Implementation to read the input function from ONLY a 3-columns data file (Time-InputFunctionRadioactivity-WholeBloodRadioactivity).
void	set_plot (const std::vector< PlasmaSample > &plasma_blood_plot)
	Function to set the plasma_blood_plot.
PlasmaData	get_sample_data_in_frames (TimeFrameDefinitions time_frame_def)
	Sorts the plasma_data into frames.
void	decay_correct_PlasmaData ()
	Function to decay correct the data.
Functions to get parameters
Function to shift the time data This is useful if the start time of the scan and the start time of the plasma are not precisely correct. This can be measured by the plasma peak and the very first frames of the dynamic images. Note This cannot be estimated in the current implementation of the direct reconstructions. Thus, it is given externally.
double	get_time_shift ()
	Function to get the time shift.
bool	get_is_decay_corrected () const
double	get_isotope_halflife () const
	Function to get the isotope halflife.
TimeFrameDefinitions	get_time_frame_definitions () const
Functions to set parameters
void	set_time_frame_definitions (const TimeFrameDefinitions &plasma_fdef)
void	set_is_decay_corrected (const bool is_decay_corrected)
void	set_isotope_halflife (const double isotope_halflife)
	Function to set the isotope halflife.
void	shift_time (const double time_shift)
	Function to shift the time data.

const_iterator	begin () const
	begin() and end() iterators for the plasma curve and the size() function
const_iterator	end () const
unsigned int	size () const

Detailed Description

A class for storing plasma and blood samples of a single study.

See also: PlasmaSample

Constructor & Destructor Documentation

◆ PlasmaData() [1/2]

stir::PlasmaData::PlasmaData ( const std::vector< PlasmaSample > & plasma_blood_plot )

inline

constructor giving a vector

Todo: Better to use iterators

References PlasmaData().

Referenced by get_sample_data_in_frames(), PlasmaData(), and PlasmaData().

◆ PlasmaData() [2/2]

stir::PlasmaData::PlasmaData ( )

inline

default constructor

References PlasmaData().

◆ ~PlasmaData()

stir::PlasmaData::~PlasmaData ( )

inline

default constructor

default destructor

References ~PlasmaData().

Referenced by ~PlasmaData().

Member Function Documentation

◆ read_plasma_data()

void stir::PlasmaData::read_plasma_data ( const std::string input_string )

inline

Implementation to read the input function from ONLY a 3-columns data file (Time-InputFunctionRadioactivity-WholeBloodRadioactivity).

Todo: Implementation to set the input units.

Implementation to read the input function from ONLY a 3-columns data file (Time-InputFunctionRadioactivity-TotalBloodRadioactivity).

Warning: Assumes that the input function is not corrected for decay.

References stir::error(), and read_plasma_data().

Referenced by read_plasma_data(), and stir::modellingTests::run_tests().

◆ set_plot()

void stir::PlasmaData::set_plot ( const std::vector< PlasmaSample > & plasma_blood_plot )

inline

Function to set the plasma_blood_plot.

References set_plot().

Referenced by stir::modellingTests::run_tests(), and set_plot().

◆ get_sample_data_in_frames()

PlasmaData stir::PlasmaData::get_sample_data_in_frames ( TimeFrameDefinitions time_frame_def )

inline

Sorts the plasma_data into frames.

Sorts the plasma_data into frames

Warning: It corrects for decay if the data are not decay corrected.

Returns: PlasmaData are in start-end frames time mode.

References begin(), decay_correct_PlasmaData(), stir::TimeFrameDefinitions::get_num_frames(), get_sample_data_in_frames(), stir::integrate_discrete_function(), PlasmaData(), set_isotope_halflife(), set_time_frame_definitions(), and stir::warning().

Referenced by get_sample_data_in_frames(), and stir::modellingTests::run_tests().

◆ get_time_shift()

double stir::PlasmaData::get_time_shift ( )

inline

Function to get the time shift.

References get_time_shift().

Referenced by get_time_shift().

◆ get_isotope_halflife()

double stir::PlasmaData::get_isotope_halflife ( ) const

inline

Function to get the isotope halflife.

References get_isotope_halflife().

Referenced by get_isotope_halflife().

◆ set_time_frame_definitions()

void stir::PlasmaData::set_time_frame_definitions ( const TimeFrameDefinitions & plasma_fdef )

inline

Note: The set_time_frame_definitions() is prefered than giving directly the Scan TimeFrameDefinitions since the sample may not be measured for all the frames
For example at the beginning or at the end of the scan.

References set_time_frame_definitions().

Referenced by get_sample_data_in_frames(), and set_time_frame_definitions().