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STIR
6.2.0
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Implementation of functions which read/write Interfile data. More...
#include "stir/ExamInfo.h"#include "stir/TimeFrameDefinitions.h"#include "stir/PatientPosition.h"#include "stir/ImagingModality.h"#include "stir/IO/interfile.h"#include "stir/interfile_keyword_functions.h"#include "stir/IO/InterfileHeader.h"#include "stir/IO/InterfileHeaderSiemens.h"#include "stir/IO/InterfilePDFSHeaderSPECT.h"#include "stir/IndexRange3D.h"#include "stir/utilities.h"#include "stir/CartesianCoordinate3D.h"#include "stir/VoxelsOnCartesianGrid.h"#include "stir/ProjDataFromStream.h"#include "stir/ProjDataInfoCylindricalArcCorr.h"#include "stir/Scanner.h"#include "stir/Succeeded.h"#include "stir/IO/write_data.h"#include "stir/IO/read_data.h"#include "stir/is_null_ptr.h"#include "stir/Bin.h"#include "stir/stream.h"#include "stir/error.h"#include "stir/warning.h"#include "stir/DynamicDiscretisedDensity.h"#include "stir/modelling/ParametricDiscretisedDensity.h"#include "stir/date_time_functions.h"#include <boost/format.hpp>#include <fstream>#include <algorithm>#include "stir/ProjDataInfoBlocksOnCylindricalNoArcCorr.h"#include "stir/ProjDataInfoGenericNoArcCorr.h"#include "stir/ProjDataInfoSubsetByView.h"Namespaces | |
| stir | |
| Namespace for the STIR library (and some/most of its applications) | |
Functions | |
| bool | stir::is_interfile_signature (const char *const signature) |
| Checks if the signature corresponds to the start of an interfile header. More... | |
| VoxelsOnCartesianGrid< float > * | stir::read_interfile_image (std::istream &input, const std::string &directory_for_data="") |
| This reads the first 3d image in an Interfile header file, given as a stream. More... | |
| DynamicDiscretisedDensity * | stir::read_interfile_dynamic_image (std::istream &input, const std::string &directory_for_data) |
| Read dynamic image. | |
| ParametricDiscretisedDensity< VoxelsOnCartesianGrid< KineticParameters< 2, float > > > * | stir::read_interfile_parametric_image (std::istream &input, const std::string &directory_for_data) |
| Read parametric image. | |
| VoxelsOnCartesianGrid< float > * | stir::read_interfile_image (const std::string &filename) |
| This reads the first 3d image in an Interfile header file, given as a filename. More... | |
| DynamicDiscretisedDensity * | stir::read_interfile_dynamic_image (const std::string &filename) |
| Read dynamic image. | |
| ParametricDiscretisedDensity< VoxelsOnCartesianGrid< KineticParameters< 2, float > > > * | stir::read_interfile_parametric_image (const std::string &filename) |
| Read parametric image. | |
| Succeeded | stir::write_basic_interfile_image_header (const std::string &header_file_name, const std::string &image_file_name, const ExamInfo &exam_info, const IndexRange< 3 > &index_range, const CartesianCoordinate3D< float > &voxel_size, const CartesianCoordinate3D< float > &origin, const NumericType output_type, const ByteOrder byte_order, const VectorWithOffset< float > &scaling_factors, const VectorWithOffset< unsigned long > &file_offsets, const std::vector< std::string > &data_type_descriptions=std::vector< std::string >()) |
| This outputs an Interfile header for an image. More... | |
| template<class elemT > | |
| Succeeded | stir::write_basic_interfile (const std::string &filename, const Array< 3, elemT > &image, const NumericType output_type=NumericType::FLOAT, const float scale=0, const ByteOrder byte_order=ByteOrder::native) |
| This outputs an Interfile header and data for a Array<3,elemT> object, assuming unit voxel sizes. More... | |
| template<class NUMBER > | |
| Succeeded | stir::write_basic_interfile (const string &filename, const ExamInfo &exam_info, const Array< 3, NUMBER > &image, const CartesianCoordinate3D< float > &voxel_size, const CartesianCoordinate3D< float > &origin, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| template<class NUMBER > | |
| Succeeded | stir::write_basic_interfile (const string &filename, const Array< 3, NUMBER > &image, const CartesianCoordinate3D< float > &voxel_size, const CartesianCoordinate3D< float > &origin, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| Succeeded | stir::write_basic_interfile (const std::string &filename, const VoxelsOnCartesianGrid< float > &image, const NumericType output_type=NumericType::FLOAT, const float scale=0, const ByteOrder byte_order=ByteOrder::native) |
| This outputs an Interfile header and data for a VoxelsOnCartesianGrid<float> object. More... | |
| Succeeded | stir::write_basic_interfile (const std::string &filename, const DiscretisedDensity< 3, float > &image, const NumericType output_type=NumericType::FLOAT, const float scale=0, const ByteOrder byte_order=ByteOrder::native) |
| This outputs an Interfile header and data for a DiscretisedDensity<3,float> object. More... | |
| Succeeded | stir::write_basic_interfile (const string &filename, const ParametricVoxelsOnCartesianGrid &image, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| Succeeded | stir::write_basic_interfile (const std::string &filename, const DynamicDiscretisedDensity &image, const NumericType output_type=NumericType::FLOAT, const float scale=0, const ByteOrder byte_order=ByteOrder::native) |
| ProjDataFromStream * | stir::read_interfile_PDFS_Siemens (istream &input, const string &directory_for_data, const ios::openmode open_mode) |
| ProjDataFromStream * | stir::read_interfile_PDFS (istream &input, const string &directory_for_data, const ios::openmode open_mode) |
| ProjDataFromStream * | stir::read_interfile_PDFS (const string &filename, const ios::openmode open_mode) |
| Succeeded | stir::write_basic_interfile_PDFS_header (const std::string &header_filename, const std::string &data_filename, const ProjDataFromStream &pdfs) |
| This writes an Interfile header appropriate for the ProjDataFromStream object. More... | |
| Succeeded | stir::write_basic_interfile_PDFS_header (const std::string &data_filename, const ProjDataFromStream &pdfs) |
| This function writes an Interfile header for the pdfs object. More... | |
| template Succeeded | stir::write_basic_interfile (const string &filename, const Array< 3, signed short > &, const CartesianCoordinate3D< float > &voxel_size, const CartesianCoordinate3D< float > &origin, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| template Succeeded | stir::write_basic_interfile (const string &filename, const Array< 3, unsigned short > &, const CartesianCoordinate3D< float > &voxel_size, const CartesianCoordinate3D< float > &origin, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| template Succeeded | stir::write_basic_interfile (const string &filename, const Array< 3, float > &, const CartesianCoordinate3D< float > &voxel_size, const CartesianCoordinate3D< float > &origin, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| template Succeeded | stir::write_basic_interfile (const string &filename, const Array< 3, signed short > &image, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| template Succeeded | stir::write_basic_interfile (const string &filename, const Array< 3, unsigned short > &image, const NumericType output_type, const float scale, const ByteOrder byte_order) |
| template Succeeded | stir::write_basic_interfile (const string &filename, const Array< 3, float > &image, const NumericType output_type, const float scale, const ByteOrder byte_order) |
Implementation of functions which read/write Interfile data.
1.8.13