stir_ecat6.h File Reference

Declaration of routines which convert ECAT6 things into our building blocks and vice versa. More...

#include "stir/IO/stir_ecat_common.h"
#include "stir/IO/ecat6_types.h"
#include <string>
#include <stdio.h>
#include "stir/shared_ptr.h"

Go to the source code of this file.

Classes
class	stir::DiscretisedDensity< num_dimensions, elemT >
	This abstract class is the basis for all image representations. More...
class	stir::VoxelsOnCartesianGrid< elemT >
	This class is used to represent voxelised densities on a cuboid grid (3D). More...
class	stir::Sinogram< elemT >
	A class for 2d projection data. More...

Namespaces
	stir
	Namespace for the STIR library (and some/most of its applications)
	stir::ecat
	Namespace for the ECAT IO part of the STIR library (and some/most of its applications)
	stir::ecat::ecat6
	Namespace for the ECAT6 IO part of the STIR library (and some/most of its applications)

Functions
bool	stir::ecat::ecat6::is_ECAT6_file (const std::string &filename)
	checks if the file is in ECAT6 formatAs ECAT6 doesn't have a 'magic number' this check is somewhat heuristic. Checks are only on the main header. Current checks are: More...
bool	stir::ecat::ecat6::is_ECAT6_image_file (const std::string &filename)
	checks if the file is in ECAT6 format and if the file contains images
bool	stir::ecat::ecat6::is_ECAT6_emission_file (const std::string &filename)
	checks if the file is in ECAT6 format and if the file contains emission sinograms (or blank/transmision)
bool	stir::ecat::ecat6::is_ECAT6_attenuation_file (const std::string &filename)
	checks if the file is in ECAT6 format and if the file contains attenuation correction factors
VoxelsOnCartesianGrid< float > *	stir::ecat::ecat6::ECAT6_to_VoxelsOnCartesianGrid (const int frame_num, const int gate_num, const int data_num, const int bed_num, FILE *cti_fptr, const ECAT6_Main_header &mhead)
void	stir::ecat::ecat6::ECAT6_to_PDFS (const int frame_num, const int gate_num, const int data_num, const int bed_num, int max_ring_diff, bool arccorrected, const std::string &output_file_name, FILE *cti_fptr, const ECAT6_Main_header &mhead)
Scanner *	stir::ecat::ecat6::find_scanner_from_ECAT6_Main_header (const ECAT6_Main_header &mhead)
	determine scanner type from the ECAT6_Main_header More...
Succeeded	stir::ecat::ecat6::DiscretisedDensity_to_ECAT6 (DiscretisedDensity< 3, float > const &density, std::string const &cti_name, std::string const &orig_name, const Scanner &scanner, const int frame_num=1, const int gate_num=1, const int data_num=0, const int bed_num=0)
	Create a new ECAT6 image file and write the data in there. More...
Succeeded	stir::ecat::ecat6::DiscretisedDensity_to_ECAT6 (FILE *fptr, DiscretisedDensity< 3, float > const &density, const ECAT6_Main_header &mhead, const int frame_num=1, const int gate_num=1, const int data_num=0, const int bed_num=0)
	Write an (extra) image to an existing ECAT6 file. More...
Succeeded	stir::ecat::ecat6::ProjData_to_ECAT6 (ProjData const &proj_data, std::string const &cti_name, std::string const &orig_name, const int frame_num=1, const int gate_num=1, const int data_num=0, const int bed_num=0, const bool write_2D_sinograms=false)
	Create a new ECAT6 sinogram file and write the data in there. More...
Succeeded	stir::ecat::ecat6::ProjData_to_ECAT6 (FILE *fptr, ProjData const &proj_data, const ECAT6_Main_header &mhead, const int frame_num=1, const int gate_num=1, const int data_num=0, const int bed_num=0, const bool write_2D_sinograms=false)
	Write an (extra) set of sinograms to an existing ECAT6 file. More...
void	stir::ecat::ecat6::make_ECAT6_Main_header (ECAT6_Main_header &, const Scanner &, const std::string &orig_name, ExamInfo const &exam_info)
	Fill in most of the main header given a Scanner object and orig_name.
void	stir::ecat::ecat6::make_ECAT6_Main_header (ECAT6_Main_header &mhead, Scanner const &scanner, const std::string &orig_name, DiscretisedDensity< 3, float > const &density)
	Fill in most of the main header given a Scanner object and orig_name and an image. More...
void	stir::ecat::ecat6::make_ECAT6_Main_header (ECAT6_Main_header &mhead, const std::string &orig_name, ProjDataInfo const &proj_data_info)
	Fill in most of the main header given an orig_name and a proj_data_info. More...

Detailed Description

Declaration of routines which convert ECAT6 things into our building blocks and vice versa.

Deprecated:

Author

Kris Thielemans

PARAPET project