stir Directory Reference

Directory dependency graph for stir:

Directories
	config
	data
	detail
	evaluation
	geometry
	IO
	KOSMAPOSL
	listmode
	modelling
	numerics
	OSMAPOSL
	OSSPS
	recon_buildblock
	scatter
	Shape
	spatial_transformation

Files
	ArcCorrection.h
	Declaration of class stir::ArcCorrection.
	Array.h
	defines the stir::Array class for multi-dimensional (numeric) arrays
	Array.inl
	inline implementations for the stir::Array class
	Array_complex_numbers.h
	defines additional numerical operations for arrays of complex numbers
	array_index_functions.h
	a variety of useful functions for indexing stir::Array objects
	array_index_functions.inl
	implementation of functions in stir/array_index_functions.h
	ArrayFilter1DUsingConvolution.h
	Declaration of class stir::ArrayFilter1DUsingConvolution.
	ArrayFilter1DUsingConvolutionSymmetricKernel.h
	Declaration of class stir::ArrayFilter1DUsingConvolutionSymmetricKernel.
	ArrayFilter2DUsingConvolution.h
	Declaration of class ArrayFilter2DUsingConvolution.
	ArrayFilter3DUsingConvolution.h
	Declaration of class ArrayFilter3DUsingConvolution.
	ArrayFilterUsingRealDFTWithPadding.h
	Declaration of class stir::ArrayFilterUsingRealDFTWithPadding.
	ArrayFunction.h
	This include file provides some additional functionality for stir::Array objects.
	ArrayFunction.inl
	Implementations for ArrayFunction.h.
	ArrayFunctionObject.h
	Declaration of class stir::ArrayFunctionObject.
	ArrayFunctionObject_1ArgumentImplementation.h
	Declaration of class stir::ArrayFunctionObject_1ArgumentImplementation.
	ArrayFunctionObject_2ArgumentImplementation.h
	Declaration of class stir::ArrayFunctionObject_2ArgumentImplementation.
	ArrayFwd.h
	forward declaration of stir::Array class for multi-dimensional (numeric) arrays
	assign.h
	defines the stir::assign function to assign values to different data types
	assign_to_subregion.h
	declares the stir::assign_to_subregion function
	assign_to_subregion.inl
	implementation of the stir::assign_to_subregion function
	BasicCoordinate.h
	This file declares class stir::BasicCoordinate and some functions acting on stir::BasicCoordinate objects.
	BasicCoordinate.inl
	(inline) implementations for stir::BasicCoordinate
	Bin.h
	Declaration of class stir::Bin.
	Bin.inl
	Implementations of inline functions of class stir::Bin.
	BoundaryConditions.h
	Declaration of class stir::BoundaryConditions.
	ByteOrder.h
	This file declares the stir::ByteOrder class.
	ByteOrder.inl
	This file declares the stir::ByteOrder class.
	ByteOrderDefine.h
	Definition of STIRIsNativeByteOrderBigEndian and STIRIsNativeByteOrderLittleEndian preprocessor symbols.
	CartesianCoordinate2D.h
	defines the stir::CartesianCoordinate2D<coordT> class
	CartesianCoordinate2D.inl
	inline implementations for the stir::CartesianCoordinate2D<coordT> class
	CartesianCoordinate3D.h
	defines the stir::CartesianCoordinate3D<coordT> class
	CartesianCoordinate3D.inl
	inline implementations for the stir::CartesianCoordinate3D<coordT> class
	centre_of_gravity.h
	This file contains functions to compute the centre of gravity of arrays and images.
	ChainedDataProcessor.h
	Declaration of class stir::ChainedDataProcessor.
	common.h
	basic configuration include file
	convert_array.h
	This file declares the stir::convert_array functions. This is a function to convert stir::Array objects to a different numeric type.
	convert_array.inl
	implementation of stir::convert_array
	convert_range.h
	This file declares the stir::convert_range and stir::find_scale_factor functions.
	convert_range.inl
	implementation of stir::convert_range
	Coordinate2D.h
	defines the stir::Coordinate2D<coordT> class
	Coordinate2D.inl
	inline implementations for the stir::Coordinate2D class
	Coordinate3D.h
	defines the stir::Coordinate3D<coordT> class
	Coordinate3D.inl
	inline implementations for the stir::Coordinate3D class
	Coordinate4D.h
	defines the stir::Coordinate4D<coordT> class
	Coordinate4D.inl
	inline implementations for the stir::Coordinate4D class
	copy_fill.h
	Declaration of stir::copy_to and stir::fill_from templates.
	CPUTimer.h
	declares the stir::CPUTimer class.
	CPUTimer.inl
	inline implementations for stir::CPUTimer
	cross_product.h
	defines the cross-product of 2 CartesianCoordinate3D numbers
	cuda_utilities.h
	some utilities for STIR and CUDA
	DataProcessor.h
	Declaration of class stir::DataProcessor.
	DataProcessor.inl
	Inline implementations for class stir::DataProcessor.
	DataSymmetriesForViewSegmentNumbers.h
	Declaration of class stir::DataSymmetriesForViewSegmentNumbers.
	DataWithProjDataInfo.h
	declaration of stir::DataWithProjDataInfo
	DataWithProjDataInfo.inl
	inline implementations of stir::DataWithProjDataInfo
	date_time_functions.h
	Functions for date-time conversions.
	decay_correction_factor.h
	Simple functions to compute the decay correction factor.
	Densel.h
	Declaration of typedef stir::Densel.
	deprecated.h
	This file declares a deprecation macro.
	DetectionPosition.h
	Declaration of class stir::DetectionPosition.
	DetectionPosition.inl
	Implementation of inline methods of class stir::DetectionPosition.
	DetectionPositionPair.h
	Declaration of class stir::DetectionPositionPair.
	DetectionPositionPair.inl
	Implementation of inline methods of class stir::DetectionPositionPair.
	DetectorCoordinateMap.h
	Declaration of class stir::DetectorCoordinateMap.
	DiscretisedDensity.h
	defines the stir::DiscretisedDensity class
	DiscretisedDensity.inl
	inline implementation for stir::DiscretisedDensity
	DiscretisedDensityOnCartesianGrid.h
	defines the stir::DiscretisedDensityOnCartesianGrid class
	DiscretisedDensityOnCartesianGrid.inl
	inline implementations for stir::DiscretisedDensityOnCartesianGrid
	display.h
	Functions to display 2D and 3D stir::Array and stir::RelatedViewgrams objects.
	display.inl
	functions to display 2D and 3D stir::Array objects
	doxygen_doc_for_boost.h
	Documentation for some boost functions.
	doxygengroups.h
	doxygenmain.h
	DynamicDiscretisedDensity.h
	Declaration of class stir::DynamicDiscretisedDensity.
	DynamicDiscretisedDensity.inl
	Inline implementations of class stir::DynamicDiscretisedDensity.
	DynamicProjData.h
	Declaration of class stir::DynamicProjData.
	error.h
	Declaration of stir::error()
	ExamData.h
	declaration of stir::ExamData
	ExamInfo.h
	This file declares the class stir::ExamInfo.
	ExamInfo.inl
	This file declares the class stir::ExamInfo.
	extend_projdata.h
	extract_line.h
	Declaration of stir::extract_line.
	extract_line.inl
	Implementation of stir::extract_line.
	FactoryRegistry.h
	Declaration of class stir::FactoryRegistry.
	FactoryRegistry.inl
	Inline implementations for stir::FactoryRegistry.
	FilePath.h
	Declaration of class stir::FilePath This is a class implementing basic filesytem functionality. Parts of this class were copied from Functions for filename manipulations.
	FilePath.inl
	Implementations of inline functions for class stir::FilePath.
	find_fwhm_in_image.h
	A collection of functions to measure resolution.
	find_fwhm_in_image.inl
	A collection of functions to measure resolution.
	find_STIR_config.h
	Declaration of functions to get configuration directory etc.
	format.h
	Include for formatting function. Use standard library version if available (C++20 and newer). Otherwise use fmt::format, which is included into STIR as a git submodule.
	FullArrayIterator.h
	This file declares the stir::FullArrayIterator class.
	FullArrayIterator.inl
	inline implementations for stir::FullArrayIterator.
	GammaArrayFilter2D.h
	Declaration of class stir::GammaArrayFilter2D.
	GammaImageFilter2D.h
	Declaration of class stir::GammaImageFilter2D.
	GatedDiscretisedDensity.h
	Implementation of class stir::GatedDiscretisedDensity.
	GatedProjData.h
	Declaration of class stir::GatedProjData.
	GeneralisedPoissonNoiseGenerator.h
	Declares stir::GeneralisedPoissonNoiseGenerator.
	GeometryBlocksOnCylindrical.h
	Declaration of class stir::GeometryBlocksOnCylindrical.
	getopt.h
	HigherPrecision.h
	class stir::HigherPrecision
	HighResWallClockTimer.h
	High-resolution wall-clock timer stir::HighResWallClockTimer.
	HUToMuImageProcessor.h
	Declaration of class stir::HUToMuImageProcessor.
	ImagingModality.h
	Declaration of class stir::ImagingModality.
	index_at_maximum.h
	Declaration of stir:index_at_maximum() and stir::indices_at_maximum()
	IndexRange.h
	This file defines the stir::IndexRange class.
	IndexRange.inl
	inline definitions for the IndexRange class
	IndexRange2D.h
	This file declares the class stir::IndexRange2D.
	IndexRange2D.inl
	inline implementations for stir::IndexRange2D.
	IndexRange3D.h
	This file declares the class stir::IndexRange3D.
	IndexRange3D.inl
	inline implementations for stir::IndexRange3D.
	IndexRange4D.h
	This file declares the class stir::IndexRange4D.
	IndexRange4D.inl
	inline implementations for stir::IndexRange4D.
	info.h
	Declaration of stir::info()
	interfile_keyword_functions.h
	Functions useful for manipulating Interfile keywords.
	interpolate.h
	declares functions for interpolation
	interpolate_projdata.h
	inverse_SSRB.h
	is_null_ptr.h
	Definition of stir::is_null_ptr functions.
	KeyParser.h
	Declaration of class stir::KeyParser.
	line.h
	declaration of class stir::Line
	linear_regression.h
	Declaration of stir::linear_regression()
	linear_regression.inl
	Implementation of inline functions for stir::linear_regression()
	LORCoordinates.h
	defines various classes for specifying a line in 3 dimensions
	LORCoordinates.inl
	Implementations for LORCoordinates.h.
	make_array.h
	Declaration of functions for constructing arrays stir::make_1d_array etc.
	make_array.inl
	Implementation of functions for constructing arrays stir::make_1d_array etc.
	MaximalArrayFilter3D.h
	Applies the dilation filter (i.e. voxel=max(neighbours))
	MaximalImageFilter3D.h
	Implementations for class stir::MaximalImageFilter3D.
	MedianArrayFilter3D.h
	Declaration of class stir::MedianArrayFilter3D.
	MedianImageFilter3D.h
	Declaration of class stir::MedianImageFilter3D.h.
	min_positive_element.h
	Declares the stir::min_positive_element() function.
	MinimalArrayFilter3D.h
	Applies the erosion filter (i.e. voxel=min(neighbours))
	MinimalImageFilter3D.h
	Implementations for class MinimalImageFilter3D.
	ML_norm.h
	Preliminary things for ML normalisation factor estimation.
	modulo.h
	defines stir::modulo() and related functions
	more_algorithms.h
	Declaration of some functions missing from std::algorithm.
	more_algorithms.inl
	Implementation of some functions missing from std::algorithm.
	MultipleDataSetHeader.h
	Declaration of class stir::MultipleDataSetHeader.
	MultipleDataSetHeader.inl
	Inline implementations of class stir::MultipleDataSetHeader.
	MultipleProjData.h
	Declaration of class stir::MultipleProjData.
	multiply_crystal_factors.h
	Declaration of stir::multiply_crystal_factors.
	NestedIterator.h
	This file declares the stir::NestedIterator class and supporting function objects.
	NestedIterator.inl
	inline implementations for stir::NestedIterator.
	NestedIteratorHelpers.h
	This file defines supporting function objects for stir::NestedIterator.
	NonseparableConvolutionUsingRealDFTImageFilter.h
	Declaration of class NonseparableConvolutionUsingRealDFTImageFilter.
	num_threads.h
	Implementation of functions related to setting/getting the number of threads.
	NumericInfo.h
	This file declares the class stir::NumericInfo.
	NumericType.h
	This file declares the stir::NumericType class.
	NumericType.inl
	Implementation of inline methods of class stir::NumericType.
	NumericVectorWithOffset.h
	defines the stir::NumericVectorWithOffset class
	NumericVectorWithOffset.inl
	inline implementations for stir::NumericVectorWithOffset
	ParseAndCreateFrom.h
	Definition of the stir::ParseAndCreateFrom class.
	ParseAndCreateFrom.inl
	implementation of the stir::ParseAndCreateFrom class for stir:DiscretisedDensity
	ParseDiscretisedDensityParameters.h
	Definition of the stir::ParseDiscretisedDensityParameters class.
	ParsingObject.h
	Declaration of class stir::ParsingObject.
	PatientPosition.h
	Declaration of class stir::PatientPosition.
	PixelsOnCartesianGrid.h
	defines the stir::PixelsOnCartesianGrid class
	PixelsOnCartesianGrid.inl
	inline implementations for the stir::PixelsOnCartesianGrid class
	PostFiltering.h
	Declaration the helper class PostFiltering.
	PostFiltering.inl
	ProjData.h
	Declaration of class stir::ProjData.
	ProjData.inl
	Implementations for inline functions of class stir::ProjData.
	ProjDataFromStream.h
	Declaration of class stir::ProjDataFromStream.
	ProjDataFromStream.inl
	Inline implementations for class stir::ProjDataFromStream.
	ProjDataGEHDF5.h
	Declaration of class stir::GE::RDF_HDF5::ProjDataFromGEHDF5.
	ProjDataInfo.h
	Declaration of class stir::ProjDataInfo.
	ProjDataInfo.inl
	Implementations of inline functions for class stir::ProjDataInfo.
	ProjDataInfoBlocksOnCylindrical.h
	Declaration of class stir::ProjDataInfoBlocksOnCylindrical.
	ProjDataInfoBlocksOnCylindricalNoArcCorr.h
	Declaration of class stir::ProjDataInfoBlocksOnCylindricalNoArcCorr.
	ProjDataInfoCylindrical.h
	Declaration of class stir::ProjDataInfoCylindrical.
	ProjDataInfoCylindrical.inl
	Implementation of inline functions of class stir::ProjDataInfoCylindrical.
	ProjDataInfoCylindricalArcCorr.h
	Declaration of class stir::ProjDataInfoCylindricalArcCorr.
	ProjDataInfoCylindricalArcCorr.inl
	Implementation of inline functions of class stir::ProjDataInfoCylindricalArcCorr.
	ProjDataInfoCylindricalNoArcCorr.h
	Declaration of class stir::ProjDataInfoCylindricalNoArcCorr.
	ProjDataInfoCylindricalNoArcCorr.inl
	Implementation of inline functions of class ProjDataInfoCylindricalNoArcCorr.
	ProjDataInfoGeneric.h
	ProjDataInfoGenericNoArcCorr.h
	Declaration of class stir::ProjDataInfoGenericNoArcCorr.
	ProjDataInfoGenericNoArcCorr.inl
	Implementation of inline functions of class stir::ProjDataInfoGenericNoArcCorr.
	ProjDataInfoSubsetByView.h
	Declaration of class stir::ProjDataInfoSubsetByView.
	ProjDataInMemory.h
	Declaration of class stir::ProjDataInMemory.
	ProjDataInterfile.h
	Declaration of class stir::ProjDataInterfile.
	Radionuclide.h
	Declaration of class stir::Radionuclide.
	RadionuclideDB.h
	Declaration of class stir::RadionuclideDB.
	recon_array_functions.h
	a variety of useful functions
	RegisteredObject.h
	Declaration of class stiir::RegisteredObject.
	RegisteredObject.inl
	Inline implementations for class stir::RegisteredObject.
	RegisteredObjectBase.h
	Declaration of class stir::RegisteredObjectBase.
	RegisteredParsingObject.h
	Declaration of class stir::RegisteredParsingObject.
	RegisteredParsingObject.inl
	Inline implementations for class stir::RegisteredParsingObject.
	RelatedViewgrams.h
	Declaration of class stir::RelatedViewgrams.
	RelatedViewgrams.inl
	inline implementations for class stir::RelatedViewgrams
	round.h
	Declaration of the stir::round functions.
	round.inl
	Implementation of the stir::round functions.
	RunTests.h
	defines the stir::RunTests class
	scale_sinograms.h
	declaration of stir::scale_sinograms and stir::get_scale_factors_per_sinogram
	Scanner.h
	Declaration of class stir::Scanner.
	Scanner.inl
	implementation of inline functions of class Scanner
	Segment.h
	Declaration of class stir::Segment.
	Segment.inl
	implementation of inline functions of class stir::Segment
	SegmentBySinogram.h
	Declaration of class stir::SegmentBySinogram.
	SegmentBySinogram.inl
	Implementations of inline functions of class stir::SegmentBySinogram.
	SegmentByView.h
	Declaration of class stir::SegmentByView.
	SegmentByView.inl
	Implementations of inline functions of class stir::SegmentByView.
	SegmentIndices.h
	Definition of class stir::SegmentIndices.
	SegmentIndices.inl
	inline implementations for class stir::SegmentIndices
	SeparableArrayFunctionObject.h
	Declaration of class stir::SeparableArrayFunctionObject.
	SeparableCartesianMetzImageFilter.h
	Declaration of class stir::SeparableCartesianMetzImageFilter.
	SeparableConvolutionImageFilter.h
	Declaration of class stir::SeparableConvolutionImageFilter.
	SeparableGaussianArrayFilter.h
	Declaration of class stir::SeparableGaussianArrayFilter.
	SeparableGaussianImageFilter.h
	Declaration of class stir::SeparableGaussianImageFilter.
	SeparableMetzArrayFilter.h
	Declaration of class stir::SeparableMetzArrayFilter.
	shared_ptr.h
	Import of std::shared_ptr, std::dynamic_pointer_cast and std::static_pointer_cast into the stir namespace.
	Sinogram.h
	Declaration of class stir::Sinogram.
	Sinogram.inl
	Implementations of inline functions of class stir::Sinogram.
	SinogramIndices.h
	Definition of class stir::SinogramIndices.
	SinogramIndices.inl
	inline implementations for class stir::SinogramIndices
	SSRB.h
	Declaration of stir::SSRB functions.
	stir_math.h
	StirException.h
	stream.h
	Input/output of basic vector-like types to/from streams.
	stream.inl
	Input/output of basic vector-like types to/from streams.
	Succeeded.h
	Declaration of class stir::Succeeded.
	TextWriter.h
	thresholding.h
	Declaration of functions that threshold sequences (specified by iterators).
	ThresholdMinToSmallPositiveValueDataProcessor.h
	Declaration of class stir::ThresholdMinToSmallPositiveValueDataProcessor.
	TimedBlock.h
	Class stir::TimedBlock.
	TimedObject.h
	declares the stir::TimedObject class
	TimedObject.inl
	inline implementations for stir::TimedObject
	TimeFrameDefinitions.h
	Declaration of class stir::TimeFrameDefinitions.
	TimeGateDefinitions.h
	Declaration of class stir::TimeGateDefinitions.
	Timer.h
	This declares the stir::Timer class.
	Timer.inl
	inline implementations for stir::Timer
	TOF_conversions.h
	Implementations of inline functions for TOF time to mm.
	TrivialDataSymmetriesForViewSegmentNumbers.h
	Declaration of class stir::TrivialDataSymmetriesForViewSegmentNumbers.
	TrivialDataSymmetriesForViewSegmentNumbers.inl
	Implementation of inline-methods of class stir::TrivialDataSymmetriesForViewSegmentNumbers.
	TruncateToCylindricalFOVImageProcessor.h
	Declaration of class stir::TruncateToCylindricalFOVImageProcessor.
	type_traits.h
	defines various type traits, checking for iterators etc
	unique_ptr.h
	Import of std::unique_ptr into the stir namespace, together with work-arounds for other compilers.
	utilities.h
	This file declares various utility functions.
	utilities.inl
	inline implementations for utility.h
	VectorWithOffset.h
	defines the stir::VectorWithOffset class
	VectorWithOffset.inl
	inline implementations of stir::VectorWithOffset
	Verbosity.h
	Declaration of class stir::Verbosity.
	Viewgram.h
	Declaration of class stir::Viewgram.
	Viewgram.inl
	Inline implementations of class stir::Viewgram.
	ViewgramIndices.h
	Definition of class stir::ViewgramIndices.
	ViewgramIndices.inl
	inline implementations for class stir::ViewgramIndices
	ViewSegmentNumbers.h
	Definition of class stir::ViewSegmentNumbers, alias to stir::ViewgramIndices.
	ViewSegmentNumbers.inl
	inline implementations for class stir::ViewSegmentNumbers
	VoxelsOnCartesianGrid.h
	defines the stir::VoxelsOnCartesianGrid class
	VoxelsOnCartesianGrid.inl
	inline implementations for the stir::VoxelsOnCartesianGrid class
	warning.h
	Declaration of stir::warning()
	WienerArrayFilter2D.h
	Declaration of class stir::WienerArrayFilter2D.
	WienerImageFilter2D.h
	Declaration of class stir::WienerImageFilter2D.h.
	zoom.h
	This file declares various zooming functions.
	ZoomOptions.h
	Declaration of class stir::ZoomOptions.